FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2044, 662 aa 1>>>pF1KE2044 662 - 662 aa - 662 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2228+/-0.000737; mu= 21.4524+/- 0.045 mean_var=85.4850+/-16.787, 0's: 0 Z-trim(111.1): 35 B-trim: 64 in 1/50 Lambda= 0.138717 statistics sampled from 12087 (12115) to 12087 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.372), width: 16 Scan time: 4.140 The best scores are: opt bits E(32554) CCDS54232.1 IL12RB1 gene_id:3594|Hs108|chr19 ( 662) 4621 934.7 0 CCDS32957.1 IL12RB1 gene_id:3594|Hs108|chr19 ( 381) 2417 493.4 2.4e-139 >>CCDS54232.1 IL12RB1 gene_id:3594|Hs108|chr19 (662 aa) initn: 4621 init1: 4621 opt: 4621 Z-score: 4995.8 bits: 934.7 E(32554): 0 Smith-Waterman score: 4621; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662) 10 20 30 40 50 60 pF1KE2 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SAHPEKLTLWSTVLSTYHFGGNASAAGTPHHVSVKNHSLDSVSVDWAPSLLSTCPGVLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SAHPEKLTLWSTVLSTYHFGGNASAAGTPHHVSVKNHSLDSVSVDWAPSLLSTCPGVLKE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 YVVRCRDEDSKQVSEHPVQPTETQVTLSGLRAGVAYTVQVRADTAWLRGVWSQPQRFSIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 YVVRCRDEDSKQVSEHPVQPTETQVTLSGLRAGVAYTVQVRADTAWLRGVWSQPQRFSIE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 VQVSDWLIFFASLGSFLSILLVGVLGYLGLNRAARHLCPPLPTPCASSAIEFPGGKETWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 VQVSDWLIFFASLGSFLSILLVGVLGYLGLNRAARHLCPPLPTPCASSAIEFPGGKETWQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 WINPVDFQEEASLQEALVVEMSWDKGERTEPLEKTELPEGAPELALDTELSLEDGDRCKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 WINPVDFQEEASLQEALVVEMSWDKGERTEPLEKTELPEGAPELALDTELSLEDGDRCKA 610 620 630 640 650 660 pF1KE2 KM :: CCDS54 KM >>CCDS32957.1 IL12RB1 gene_id:3594|Hs108|chr19 (381 aa) initn: 2417 init1: 2417 opt: 2417 Z-score: 2615.1 bits: 493.4 E(32554): 2.4e-139 Smith-Waterman score: 2417; 99.7% identity (100.0% similar) in 341 aa overlap (1-341:1-341) 10 20 30 40 50 60 pF1KE2 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA ::::::::::::::::::::::::::::::::::::::::. CCDS32 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTDGMISAHCNLRLPDSRDSPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA CCDS32 SASRVAGITGICHHTRLILYF 370 380 662 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:05:42 2016 done: Mon Nov 7 16:05:43 2016 Total Scan time: 4.140 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]