FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6536, 390 aa 1>>>pF1KB6536 390 - 390 aa - 390 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0992+/-0.00117; mu= 7.9796+/- 0.070 mean_var=166.7809+/-55.523, 0's: 0 Z-trim(104.9): 236 B-trim: 1034 in 2/47 Lambda= 0.099312 statistics sampled from 7775 (8157) to 7775 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.251), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS11887.1 HRH4 gene_id:59340|Hs108|chr18 ( 390) 2584 383.1 2.4e-106 CCDS45841.1 HRH4 gene_id:59340|Hs108|chr18 ( 302) 1612 243.7 1.7e-64 CCDS13493.1 HRH3 gene_id:11255|Hs108|chr20 ( 445) 635 103.9 3e-22 CCDS1616.1 CHRM3 gene_id:1131|Hs108|chr1 ( 590) 417 72.8 9.4e-13 CCDS10031.1 CHRM5 gene_id:1133|Hs108|chr15 ( 532) 379 67.3 3.8e-11 CCDS5843.1 CHRM2 gene_id:1129|Hs108|chr7 ( 466) 369 65.8 9.4e-11 >>CCDS11887.1 HRH4 gene_id:59340|Hs108|chr18 (390 aa) initn: 2584 init1: 2584 opt: 2584 Z-score: 2022.7 bits: 383.1 E(32554): 2.4e-106 Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390) 10 20 30 40 50 60 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 DFFVGVISIPLYIPHTLFEWDFGKEICVFWLTTDYLLCTASVYNIVLISYDRYLSVSNAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DFFVGVISIPLYIPHTLFEWDFGKEICVFWLTTDYLLCTASVYNIVLISYDRYLSVSNAV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYILAITSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYILAITSF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 LEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSSRRSLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSSRRSLSA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 STEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVELLRARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 STEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVELLRARR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 LAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVNPLLYPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVNPLLYPL 310 320 330 340 350 360 370 380 390 pF1KB6 CHKRFQKAFLKIFCIKKQPLPSQHSRSVSS :::::::::::::::::::::::::::::: CCDS11 CHKRFQKAFLKIFCIKKQPLPSQHSRSVSS 370 380 390 >>CCDS45841.1 HRH4 gene_id:59340|Hs108|chr18 (302 aa) initn: 1612 init1: 1612 opt: 1612 Z-score: 1271.4 bits: 243.7 E(32554): 1.7e-64 Smith-Waterman score: 1816; 77.4% identity (77.4% similar) in 390 aa overlap (1-390:1-302) 10 20 30 40 50 60 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 DFFVGVISIPLYIPHTLFEWDFGKEICVFWLTTDYLLCTASVYNIVLISYDRYLSVSNAV :::: CCDS45 DFFV-------------------------------------------------------- 130 140 150 160 170 180 pF1KB6 SYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYILAITSF :::::::::::::::::::::::::::: CCDS45 --------------------------------VSESWKDEGSECEPGFFSEWYILAITSF 70 80 90 190 200 210 220 230 240 pF1KB6 LEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSSRRSLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSSRRSLSA 100 110 120 130 140 150 250 260 270 280 290 300 pF1KB6 STEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVELLRARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 STEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVELLRARR 160 170 180 190 200 210 310 320 330 340 350 360 pF1KB6 LAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVNPLLYPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVNPLLYPL 220 230 240 250 260 270 370 380 390 pF1KB6 CHKRFQKAFLKIFCIKKQPLPSQHSRSVSS :::::::::::::::::::::::::::::: CCDS45 CHKRFQKAFLKIFCIKKQPLPSQHSRSVSS 280 290 300 >>CCDS13493.1 HRH3 gene_id:11255|Hs108|chr20 (445 aa) initn: 961 init1: 312 opt: 635 Z-score: 512.8 bits: 103.9 E(32554): 3e-22 Smith-Waterman score: 896; 39.5% identity (63.6% similar) in 423 aa overlap (10-382:29-439) 10 20 30 40 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFV .: . ..:: .:.:. : .::::::.:::: CCDS13 MERAPPDGPLNASGALAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFV 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 VDKNLRHRSSYFFLNLAISDFFVGVISIPLYIPHTLF-EWDFGKEICVFWLTTDYLLCTA .:..:: ....:.::::::::.::.. ::::.:..: .: ::. .: .::..::::::. CCDS13 ADSSLRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCTS 70 80 90 100 110 120 110 120 130 140 150 pF1KB6 SVYNIVLISYDRYLSVSNAVSYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWK-- :..:::::::::.:::. :::::.:. . . : :. :::::::. :: :: ::. CCDS13 SAFNIVLISYDRFLSVTRAVSYRAQQGDTRRAVRKMLLVWVLAFLLYGPAIL---SWEYL 130 140 150 160 170 160 170 180 190 pF1KB6 DEGS-----ECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIY--------------- . :: .: :: .::.: .: ::: : . :..::..:: CCDS13 SGGSSIPEGHCYAEFFYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGAR 180 190 200 210 220 230 200 210 220 230 pF1KB6 ---------------------WSLWKRDHLSRCQSHP---GLTAVSSNICGHSFRGRLSS :. :.. : : : .::... :.. : .. CCDS13 EAAGPEPPPEAQPSPPPPPGCWGCWQKGHGEAMPLHRYGVGEAAVGAEA-GEATLGGGGG 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB6 RRSLSASTEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVE :... : .: :. .: :: .:. . .: .. ..: ::: . :: . CCDS13 GGSVASPTSSSGS-SSRGTERPRSLKRGSKPSASSASLEKRMKMVSQS----FTQR--FR 300 310 320 330 340 300 310 320 330 340 350 pF1KB6 LLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVN : : :..:::::.....:..:::::.:. :. . . : . ::. .::: : :: :: CCDS13 LSRDRKVAKSLAVIVSIFGLCWAPYTLLMIIRAACHGHCVP-DYWYETSFWLLWANSAVN 350 360 370 380 390 400 360 370 380 390 pF1KB6 PLLYPLCHKRFQKAFLKIFCIKK---QPLPSQHSRSVSS :.::::::. :..:: :..: .: :: : CCDS13 PVLYPLCHHSFRRAFTKLLCPQKLKIQPHSSLEHCWK 410 420 430 440 >>CCDS1616.1 CHRM3 gene_id:1131|Hs108|chr1 (590 aa) initn: 449 init1: 162 opt: 417 Z-score: 342.4 bits: 72.8 E(32554): 9.4e-13 Smith-Waterman score: 417; 30.6% identity (65.5% similar) in 278 aa overlap (16-284:69-336) 10 20 30 40 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKN : .::. ...:.. ..:: :::..: :.:. CCDS16 SYNVSRAAGNFSSPDGTTDDPLGGHTVWQVVFIAFLTGILALVTIIGNILVIVSFKVNKQ 40 50 60 70 80 90 50 60 70 80 90 100 pF1KB6 LRHRSSYFFLNLAISDFFVGVISIPLYIPHTLFE-WDFGKEICVFWLTTDYLLCTASVYN :. ..::.:.:: .:...::::. :. . ... : .:. : .::. ::. .:::.: CCDS16 LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLAIDYVASNASVMN 100 110 120 130 140 150 110 120 130 140 150 160 pF1KB6 IVLISYDRYLSVSNAVSYRTQHTGVLKIVTLMVAV-WVLAFLVNGPMILVSESWKDEGS- ...::.:::.:.. ..::...: : . .:... ::..:.. .: :: . . . . CCDS16 LLVISFDRYFSITRPLTYRAKRT--TKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTV 160 170 180 190 200 210 170 180 190 200 210 pF1KB6 ---ECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAV :: :.:: : :.. : .:: ... .:: ..:. . .: . :: : CCDS16 PPGECFIQFLSEPTITFGTAIAAFYMPVTIMTI----LYWRIYKETE-KRTKELAGLQAS 220 230 240 250 260 270 220 230 240 250 260 270 pF1KB6 SSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSS---LMFSSRTKMNSNTIASKM ... ..: .: :: : : :. . .. .::: . . :.... :. .. CCDS16 GTEAETENFVHPTGSSRSCS-SYELQQQSMKRSNRRKYGRCHFWFTTKSWKPSSEQMDQ- 280 290 300 310 320 280 290 300 310 320 330 pF1KB6 GSFSQSDSVALHQREHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPK . :.::: CCDS16 -DHSSSDSWNNNDAAASLENSASSDEEDIGSETRAIYSIVLKLPGHSTILNSTKLPSSDN 330 340 350 360 370 380 >>CCDS10031.1 CHRM5 gene_id:1133|Hs108|chr15 (532 aa) initn: 417 init1: 159 opt: 379 Z-score: 313.6 bits: 67.3 E(32554): 3.8e-11 Smith-Waterman score: 379; 29.8% identity (63.8% similar) in 265 aa overlap (16-270:31-293) 10 20 30 40 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKN .:.: ..:.. ..::.::...: :... CCDS10 MEGDSYHNATTVNGTPVNHQPLERHRLWEVITIAAVTAVVSLITIVGNVLVMISFKVNSQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 LRHRSSYFFLNLAISDFFVGVISIPLYIPHTLF-EWDFGKEICVFWLTTDYLLCTASVYN :. ..:..:.:: .:...:..:. :: . :. .: .:. : .::. ::. .:::.: CCDS10 LKTVNNYYLLSLACADLIIGIFSMNLYTTYILMGRWALGSLACDLWLALDYVASNASVMN 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB6 IVLISYDRYLSVSNAVSYRTQHTGVLKIVTLMVAV-WVLAFLVNGPMILVSESWKDEGS- ...::.:::.:.. ..::...: : . .:... :...:.. .: :: . . . CCDS10 LLVISFDRYFSITRPLTYRAKRTP--KRAGIMIGLAWLISFILWAPAILCWQYLVGKRTV 130 140 150 160 170 170 180 190 200 210 pF1KB6 ---ECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDH-LSRCQSHPGLTA ::. :.:: : :.. : ::: ... . :: :: . :. :. ..: CCDS10 PLDECQIQFLSEPTITFGTAIAAFYIPVSVMTILYCRIYRETEKRTKDLADLQGSDSVTK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KB6 VSSNICGHS--FRGRLSSRRSLSASTEV-PASFHSERQRRKSSLMFSSRTKMNSNTIASK . . .: ::. : : :. : ::. : :. ... :. : ..: CCDS10 AEKRKPAHRALFRSCLRCPRPTLAQRERNQASWSSSRRSTSTTGKPSQATGPSANWAKAE 240 250 260 270 280 290 280 290 300 310 320 330 pF1KB6 MGSFSQSDSVALHQREHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGP CCDS10 QLTTCSSYPSSEDEDKPATDPVLQVVYKSQGKESPGEEFSAEETEETFVKAETEKSDYDT 300 310 320 330 340 350 >>CCDS5843.1 CHRM2 gene_id:1129|Hs108|chr7 (466 aa) initn: 408 init1: 121 opt: 369 Z-score: 306.6 bits: 65.8 E(32554): 9.4e-11 Smith-Waterman score: 369; 29.6% identity (65.8% similar) in 243 aa overlap (4-232:8-240) 10 20 30 40 50 pF1KB6 MPDTNSTINLSLSTRVTLAFFMSLVA----FAIMLGNALVILAFVVDKNLRHRSSY .:... :. .. . :. ::: .. ..:: ::.... :...:. ..: CCDS58 MNNSTNSSNNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 FFLNLAISDFFVGVISIPLYIPHTLF-EWDFGKEICVFWLTTDYLLCTASVYNIVLISYD :...:: .:...::.:. :: .:.. : .: .: .::. ::.. .:::.:...::.: CCDS58 FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 70 80 90 100 110 120 120 130 140 150 160 pF1KB6 RYLSVSNAVSYRTQHTGVLKIVTLMVAV-WVLAFLVNGPMILVSESWK-------DEGSE ::. :.. ..: ...: :.. .:.:. :::.:.. .: :: :. : .: CCDS58 RYFCVTKPLTYPVKRT--TKMAGMMIAAAWVLSFILWAPAILF---WQFIVGVRTVEDGE 130 140 150 160 170 170 180 190 200 210 220 pF1KB6 CEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNI : :::. . :.. : .:::... .:: . .: :: .. ..... CCDS58 CYIQFFSNAAVTFGTAIAAFYLPVIIMTV----LYWHI-SRASKSRIKKDKKEPVANQDP 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB6 CGHSF-RGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQS . :. .::. CCDS58 VSPSLVQGRIVKPNNNNMPSSDDGLEHNKIQNGKAPRDPVTENCVQGEEKESSNDSTSVS 240 250 260 270 280 290 390 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:00:56 2016 done: Mon Nov 7 16:00:57 2016 Total Scan time: 2.350 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]