Result of FASTA (omim) for pFN21AE2258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2258, 117 aa
  1>>>pF1KE2258 117 - 117 aa - 117 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6604+/-0.000297; mu= 13.4550+/- 0.018
 mean_var=54.7427+/-10.976, 0's: 0 Z-trim(116.3): 15  B-trim: 44 in 1/54
 Lambda= 0.173345
 statistics sampled from 27314 (27328) to 27314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.32), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(85289)
NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117)  780 202.4 1.4e-52
NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117)  698 181.9 2.1e-46
XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146)  578 151.9 2.7e-37
NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117)  462 122.8 1.2e-28
XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147)  296 81.4 4.6e-16
NP_001004343 (OMIM: 609605) microtubule-associated ( 147)  296 81.4 4.6e-16
NP_073729 (OMIM: 609604) microtubule-associated pr ( 125)  247 69.1   2e-12
NP_115903 (OMIM: 601242) microtubule-associated pr ( 121)  240 67.3 6.5e-12
XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182)  240 67.4 9.1e-12
XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223)  240 67.5 1.1e-11
XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223)  240 67.5 1.1e-11
NP_852610 (OMIM: 601242) microtubule-associated pr ( 125)  223 63.1 1.3e-10


>>NP_009209 (OMIM: 605125) gamma-aminobutyric acid recep  (117 aa)
 initn: 780 init1: 780 opt: 780  Z-score: 1064.9  bits: 202.4 E(85289): 1.4e-52
Smith-Waterman score: 780; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
               70        80        90       100       110       

>>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep  (117 aa)
 initn: 698 init1: 698 opt: 698  Z-score: 954.1  bits: 181.9 E(85289): 2.1e-46
Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: 
NP_113 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
               70        80        90       100       110       

>>XP_005253401 (OMIM: 607420) PREDICTED: gamma-aminobuty  (146 aa)
 initn: 578 init1: 578 opt: 578  Z-score: 790.5  bits: 151.9 E(85289): 2.7e-37
Smith-Waterman score: 578; 88.5% identity (95.8% similar) in 96 aa overlap (1-96:1-96)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
XP_005 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL   
       ::::::::::: ::::::::::.::::::::::::.                        
XP_005 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEVMVLVAQYWMPSSAVWHPLALVLD
               70        80        90       100       110       120

XP_005 ALITHLRSGAEGVIYPDPLTYGSVRL
              130       140      

>>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep  (117 aa)
 initn: 483 init1: 462 opt: 462  Z-score: 635.1  bits: 122.8 E(85289): 1.2e-28
Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::...::.: .:.:  :. ::: ::::::::::::.  ..: :.::.:::::::.::.::
NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       ...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:.
NP_009 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
               70        80        90       100       110       

>>XP_005273196 (OMIM: 609605) PREDICTED: microtubule-ass  (147 aa)
 initn: 308 init1: 138 opt: 296  Z-score: 409.3  bits: 81.4 E(85289): 4.6e-16
Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KE2         MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV
                   .:... .  :. :   :: :.:...::.::. :.   .  ::: :.::
XP_005 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS
       :..::. ::  .::.:. ::: .:....:::  .   ::::...:.....:: :.:..:.
XP_005 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KE2 DESVYGL                    
       .. ..:                     
XP_005 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>NP_001004343 (OMIM: 609605) microtubule-associated pro  (147 aa)
 initn: 308 init1: 138 opt: 296  Z-score: 409.3  bits: 81.4 E(85289): 4.6e-16
Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KE2         MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV
                   .:... .  :. :   :: :.:...::.::. :.   .  ::: :.::
NP_001 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS
       :..::. ::  .::.:. ::: .:....:::  .   ::::...:.....:: :.:..:.
NP_001 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KE2 DESVYGL                    
       .. ..:                     
NP_001 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>NP_073729 (OMIM: 609604) microtubule-associated protei  (125 aa)
 initn: 232 init1: 111 opt: 247  Z-score: 344.1  bits: 69.1 E(85289): 2e-12
Smith-Waterman score: 247; 31.3% identity (78.3% similar) in 115 aa overlap (5-117:7-121)

                 10        20        30         40        50       
pF1KE2   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
             .:... ::.:  . . ::...: ..:::.:.   . ..  ::: :.:::. ...
NP_073 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
       ...  .::.:..: :..:.:..:: . .  .:. ....:. ...:: :::..:... ..:
NP_073 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

            
pF1KE2 L    
       .    
NP_073 MKLSV
            

>>NP_115903 (OMIM: 601242) microtubule-associated protei  (121 aa)
 initn: 223 init1: 104 opt: 240  Z-score: 334.9  bits: 67.3 E(85289): 6.5e-12
Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121)

                 10        20        30         40        50       
pF1KE2   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
             .:... :  : .: ..:: ..:...:::.:.   . ..  ::: :.:::. ...
NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
       ...  .::.:..:   .:.:..:: . .  .:. ....:.....:: :::..:... ..:
NP_115 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

        
pF1KE2 L
       .
NP_115 F
        

>>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass  (182 aa)
 initn: 223 init1: 104 opt: 240  Z-score: 332.3  bits: 67.4 E(85289): 9.1e-12
Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:68-182)

                                         10        20        30    
pF1KE2                           MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVE
                                     .:... :  : .: ..:: ..:...:::.:
XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE
        40        50        60        70        80        90       

            40        50        60        70        80         90  
pF1KE2 KAP-KARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMG
       .   . ..  ::: :.:::. ......  .::.:..:   .:.:..:: . .  .:. ..
XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA
       100       110       120       130       140       150       

            100       110       
pF1KE2 QLYQEHHEEDFFLYIAYSDESVYGL
       ..:.....:: :::..:... ..:.
XP_011 DIYEQEKDEDGFLYMVYASQETFGF
       160       170       180  

>>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass  (223 aa)
 initn: 223 init1: 104 opt: 240  Z-score: 331.0  bits: 67.5 E(85289): 1.1e-11
Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:109-223)

                                         10        20        30    
pF1KE2                           MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVE
                                     .:... :  : .: ..:: ..:...:::.:
XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE
       80        90       100       110       120       130        

            40        50        60        70        80         90  
pF1KE2 KAP-KARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMG
       .   . ..  ::: :.:::. ......  .::.:..:   .:.:..:: . .  .:. ..
XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA
      140       150       160       170       180       190        

            100       110       
pF1KE2 QLYQEHHEEDFFLYIAYSDESVYGL
       ..:.....:: :::..:... ..:.
XP_011 DIYEQEKDEDGFLYMVYASQETFGF
      200       210       220   




117 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:55:03 2016 done: Mon Nov  7 15:55:04 2016
 Total Scan time:  4.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com