FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2258, 117 aa 1>>>pF1KE2258 117 - 117 aa - 117 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6604+/-0.000297; mu= 13.4550+/- 0.018 mean_var=54.7427+/-10.976, 0's: 0 Z-trim(116.3): 15 B-trim: 44 in 1/54 Lambda= 0.173345 statistics sampled from 27314 (27328) to 27314 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.32), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117) 780 202.4 1.4e-52 NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117) 698 181.9 2.1e-46 XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146) 578 151.9 2.7e-37 NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117) 462 122.8 1.2e-28 XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147) 296 81.4 4.6e-16 NP_001004343 (OMIM: 609605) microtubule-associated ( 147) 296 81.4 4.6e-16 NP_073729 (OMIM: 609604) microtubule-associated pr ( 125) 247 69.1 2e-12 NP_115903 (OMIM: 601242) microtubule-associated pr ( 121) 240 67.3 6.5e-12 XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182) 240 67.4 9.1e-12 XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223) 240 67.5 1.1e-11 XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223) 240 67.5 1.1e-11 NP_852610 (OMIM: 601242) microtubule-associated pr ( 125) 223 63.1 1.3e-10 >>NP_009209 (OMIM: 605125) gamma-aminobutyric acid recep (117 aa) initn: 780 init1: 780 opt: 780 Z-score: 1064.9 bits: 202.4 E(85289): 1.4e-52 Smith-Waterman score: 780; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 70 80 90 100 110 >>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep (117 aa) initn: 698 init1: 698 opt: 698 Z-score: 954.1 bits: 181.9 E(85289): 2.1e-46 Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF ::: :::.:::: :..::::::::::::::::::::::::. ::::.::::::::::::: NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: NP_113 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 70 80 90 100 110 >>XP_005253401 (OMIM: 607420) PREDICTED: gamma-aminobuty (146 aa) initn: 578 init1: 578 opt: 578 Z-score: 790.5 bits: 151.9 E(85289): 2.7e-37 Smith-Waterman score: 578; 88.5% identity (95.8% similar) in 96 aa overlap (1-96:1-96) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF ::: :::.:::: :..::::::::::::::::::::::::. ::::.::::::::::::: XP_005 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ::::::::::: ::::::::::.::::::::::::. XP_005 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEVMVLVAQYWMPSSAVWHPLALVLD 70 80 90 100 110 120 XP_005 ALITHLRSGAEGVIYPDPLTYGSVRL 130 140 >>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep (117 aa) initn: 483 init1: 462 opt: 462 Z-score: 635.1 bits: 122.8 E(85289): 1.2e-28 Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF ::...::.: .:.: :. ::: ::::::::::::. ..: :.::.:::::::.::.:: NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:. NP_009 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 70 80 90 100 110 >>XP_005273196 (OMIM: 609605) PREDICTED: microtubule-ass (147 aa) initn: 308 init1: 138 opt: 296 Z-score: 409.3 bits: 81.4 E(85289): 4.6e-16 Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV .:... . :. : :: :.:...::.::. :. . ::: :.:: XP_005 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS :..::. :: .::.:. ::: .:....::: . ::::...:.....:: :.:..:. XP_005 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 pF1KE2 DESVYGL .. ..: XP_005 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>NP_001004343 (OMIM: 609605) microtubule-associated pro (147 aa) initn: 308 init1: 138 opt: 296 Z-score: 409.3 bits: 81.4 E(85289): 4.6e-16 Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV .:... . :. : :: :.:...::.::. :. . ::: :.:: NP_001 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS :..::. :: .::.:. ::: .:....::: . ::::...:.....:: :.:..:. NP_001 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 pF1KE2 DESVYGL .. ..: NP_001 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>NP_073729 (OMIM: 609604) microtubule-associated protei (125 aa) initn: 232 init1: 111 opt: 247 Z-score: 344.1 bits: 69.1 E(85289): 2e-12 Smith-Waterman score: 247; 31.3% identity (78.3% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV .:... ::.: . . ::...: ..:::.:. . .. ::: :.:::. ... NP_073 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG ... .::.:..: :..:.:..:: . . .:. ....:. ...:: :::..:... ..: NP_073 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KE2 L . NP_073 MKLSV >>NP_115903 (OMIM: 601242) microtubule-associated protei (121 aa) initn: 223 init1: 104 opt: 240 Z-score: 334.9 bits: 67.3 E(85289): 6.5e-12 Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV .:... : : .: ..:: ..:...:::.:. . .. ::: :.:::. ... NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG ... .::.:..: .:.:..:: . . .:. ....:.....:: :::..:... ..: NP_115 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KE2 L . NP_115 F >>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass (182 aa) initn: 223 init1: 104 opt: 240 Z-score: 332.3 bits: 67.4 E(85289): 9.1e-12 Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:68-182) 10 20 30 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVE .:... : : .: ..:: ..:...:::.: XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 KAP-KARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMG . . .. ::: :.:::. ...... .::.:..: .:.:..:: . . .:. .. XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA 100 110 120 130 140 150 100 110 pF1KE2 QLYQEHHEEDFFLYIAYSDESVYGL ..:.....:: :::..:... ..:. XP_011 DIYEQEKDEDGFLYMVYASQETFGF 160 170 180 >>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa) initn: 223 init1: 104 opt: 240 Z-score: 331.0 bits: 67.5 E(85289): 1.1e-11 Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:109-223) 10 20 30 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVE .:... : : .: ..:: ..:...:::.: XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE2 KAP-KARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMG . . .. ::: :.:::. ...... .::.:..: .:.:..:: . . .:. .. XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA 140 150 160 170 180 190 100 110 pF1KE2 QLYQEHHEEDFFLYIAYSDESVYGL ..:.....:: :::..:... ..:. XP_011 DIYEQEKDEDGFLYMVYASQETFGF 200 210 220 117 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:55:03 2016 done: Mon Nov 7 15:55:04 2016 Total Scan time: 4.270 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]