Result of FASTA (ccds) for pFN21AE2258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2258, 117 aa
  1>>>pF1KE2258 117 - 117 aa - 117 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9069+/-0.000632; mu= 11.8287+/- 0.038
 mean_var=53.3307+/-10.627, 0's: 0 Z-trim(109.3): 14  B-trim: 5 in 1/51
 Lambda= 0.175625
 statistics sampled from 10751 (10762) to 10751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.420

The best scores are:                                      opt bits E(32554)
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17      ( 117)  780 204.9 9.4e-54
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12     ( 117)  698 184.1 1.7e-47
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16    ( 117)  462 124.3 1.7e-29
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1     ( 147)  296 82.3 9.4e-17
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16     ( 125)  247 69.8 4.5e-13
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20     ( 121)  240 68.1 1.5e-12
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12   ( 125)  236 67.1 3.1e-12
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20     ( 125)  223 63.8   3e-11


>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17           (117 aa)
 initn: 780 init1: 780 opt: 780  Z-score: 1078.5  bits: 204.9 E(32554): 9.4e-54
Smith-Waterman score: 780; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
               70        80        90       100       110       

>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12          (117 aa)
 initn: 698 init1: 698 opt: 698  Z-score: 966.2  bits: 184.1 E(32554): 1.7e-47
Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: 
CCDS86 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
               70        80        90       100       110       

>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16         (117 aa)
 initn: 483 init1: 462 opt: 462  Z-score: 643.1  bits: 124.3 E(32554): 1.7e-29
Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
       ::...::.: .:.:  :. ::: ::::::::::::.  ..: :.::.:::::::.::.::
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
       ...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:.
CCDS10 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
               70        80        90       100       110       

>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1          (147 aa)
 initn: 308 init1: 138 opt: 296  Z-score: 414.2  bits: 82.3 E(32554): 9.4e-17
Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KE2         MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV
                   .:... .  :. :   :: :.:...::.::. :.   .  ::: :.::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS
       :..::. ::  .::.:. ::: .:....:::  .   ::::...:.....:: :.:..:.
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KE2 DESVYGL                    
       .. ..:                     
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16          (125 aa)
 initn: 232 init1: 111 opt: 247  Z-score: 348.2  bits: 69.8 E(32554): 4.5e-13
Smith-Waterman score: 247; 31.3% identity (78.3% similar) in 115 aa overlap (5-117:7-121)

                 10        20        30         40        50       
pF1KE2   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
             .:... ::.:  . . ::...: ..:::.:.   . ..  ::: :.:::. ...
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
       ...  .::.:..: :..:.:..:: . .  .:. ....:. ...:: :::..:... ..:
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

            
pF1KE2 L    
       .    
CCDS10 MKLSV
            

>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20          (121 aa)
 initn: 223 init1: 104 opt: 240  Z-score: 338.9  bits: 68.1 E(32554): 1.5e-12
Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121)

                 10        20        30         40        50       
pF1KE2   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
             .:... :  : .: ..:: ..:...:::.:.   . ..  ::: :.:::. ...
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
       ...  .::.:..:   .:.:..:: . .  .:. ....:.....:: :::..:... ..:
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

        
pF1KE2 L
       .
CCDS13 F
        

>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12        (125 aa)
 initn: 221 init1: 111 opt: 236  Z-score: 333.2  bits: 67.1 E(32554): 3.1e-12
Smith-Waterman score: 236; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121)

                 10        20        30         40        50       
pF1KE2   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
             .:... ::.:  . . ::...: ..:::.:.   . ..  ::: :.:::. ...
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
       ...  .::.:..: :..:.:..:: . .  .:. ....:. ...:: :::.. ... ..:
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
               70        80        90       100       110       120

            
pF1KE2 L    
       .    
CCDS41 MKLSV
            

>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20          (125 aa)
 initn: 206 init1: 104 opt: 223  Z-score: 315.4  bits: 63.8 E(32554): 3e-11
Smith-Waterman score: 223; 31.1% identity (78.3% similar) in 106 aa overlap (14-117:20-125)

                     10        20        30         40        50   
pF1KE2       MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPS
                          : .: ..:: ..:...:::.:.   . ..  ::: :.:::.
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KE2 DLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDE
        ......  .::.:..:   .:.:..:: . .  .:. ....:.....:: :::..:...
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
               70        80        90       100       110       120

            
pF1KE2 SVYGL
        ..:.
CCDS13 ETFGF
            




117 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:55:02 2016 done: Mon Nov  7 15:55:03 2016
 Total Scan time:  1.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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