FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2258, 117 aa 1>>>pF1KE2258 117 - 117 aa - 117 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9069+/-0.000632; mu= 11.8287+/- 0.038 mean_var=53.3307+/-10.627, 0's: 0 Z-trim(109.3): 14 B-trim: 5 in 1/51 Lambda= 0.175625 statistics sampled from 10751 (10762) to 10751 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.331), width: 16 Scan time: 1.420 The best scores are: opt bits E(32554) CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 780 204.9 9.4e-54 CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 698 184.1 1.7e-47 CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 462 124.3 1.7e-29 CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 296 82.3 9.4e-17 CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 247 69.8 4.5e-13 CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 240 68.1 1.5e-12 CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 236 67.1 3.1e-12 CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 223 63.8 3e-11 >>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa) initn: 780 init1: 780 opt: 780 Z-score: 1078.5 bits: 204.9 E(32554): 9.4e-54 Smith-Waterman score: 780; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 70 80 90 100 110 >>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa) initn: 698 init1: 698 opt: 698 Z-score: 966.2 bits: 184.1 E(32554): 1.7e-47 Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF ::: :::.:::: :..::::::::::::::::::::::::. ::::.::::::::::::: CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: CCDS86 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 70 80 90 100 110 >>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa) initn: 483 init1: 462 opt: 462 Z-score: 643.1 bits: 124.3 E(32554): 1.7e-29 Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF ::...::.: .:.: :. ::: ::::::::::::. ..: :.::.:::::::.::.:: CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL ...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:. CCDS10 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 70 80 90 100 110 >>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa) initn: 308 init1: 138 opt: 296 Z-score: 414.2 bits: 82.3 E(32554): 9.4e-17 Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (5-116:13-126) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV .:... . :. : :: :.:...::.::. :. . ::: :.:: CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS :..::. :: .::.:. ::: .:....::: . ::::...:.....:: :.:..:. CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 pF1KE2 DESVYGL .. ..: CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa) initn: 232 init1: 111 opt: 247 Z-score: 348.2 bits: 69.8 E(32554): 4.5e-13 Smith-Waterman score: 247; 31.3% identity (78.3% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV .:... ::.: . . ::...: ..:::.:. . .. ::: :.:::. ... CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG ... .::.:..: :..:.:..:: . . .:. ....:. ...:: :::..:... ..: CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KE2 L . CCDS10 MKLSV >>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa) initn: 223 init1: 104 opt: 240 Z-score: 338.9 bits: 68.1 E(32554): 1.5e-12 Smith-Waterman score: 240; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV .:... : : .: ..:: ..:...:::.:. . .. ::: :.:::. ... CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG ... .::.:..: .:.:..:: . . .:. ....:.....:: :::..:... ..: CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KE2 L . CCDS13 F >>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa) initn: 221 init1: 111 opt: 236 Z-score: 333.2 bits: 67.1 E(32554): 3.1e-12 Smith-Waterman score: 236; 30.4% identity (77.4% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV .:... ::.: . . ::...: ..:::.:. . .. ::: :.:::. ... CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG ... .::.:..: :..:.:..:: . . .:. ....:. ...:: :::.. ... ..: CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 70 80 90 100 110 120 pF1KE2 L . CCDS41 MKLSV >>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa) initn: 206 init1: 104 opt: 223 Z-score: 315.4 bits: 63.8 E(32554): 3e-11 Smith-Waterman score: 223; 31.1% identity (78.3% similar) in 106 aa overlap (14-117:20-125) 10 20 30 40 50 pF1KE2 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPS : .: ..:: ..:...:::.:. . .. ::: :.:::. CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 DLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDE ...... .::.:..: .:.:..:: . . .:. ....:.....:: :::..:... CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ 70 80 90 100 110 120 pF1KE2 SVYGL ..:. CCDS13 ETFGF 117 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:55:02 2016 done: Mon Nov 7 15:55:03 2016 Total Scan time: 1.420 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]