FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5140, 116 aa
  1>>>pF1KE5140 116 - 116 aa - 116 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7148+/-0.000282; mu= 14.3811+/- 0.018
 mean_var=69.0418+/-13.499, 0's: 0 Z-trim(119.5): 7  B-trim: 0 in 0/55
 Lambda= 0.154354
 statistics sampled from 33573 (33580) to 33573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.394), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(85289)
NP_000726 (OMIM: 118850) glycoprotein hormones alp ( 116)  818 189.9 8.1e-49
NP_001239312 (OMIM: 118850) glycoprotein hormones  ( 147)  633 148.8 2.4e-36


>>NP_000726 (OMIM: 118850) glycoprotein hormones alpha c  (116 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 997.4  bits: 189.9 E(85289): 8.1e-49
Smith-Waterman score: 818; 99.1% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPLFSQPGAPILQCMGCCFSRA
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_000 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRA
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE5 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS
               70        80        90       100       110      

>>NP_001239312 (OMIM: 118850) glycoprotein hormones alph  (147 aa)
 initn: 633 init1: 633 opt: 633  Z-score: 773.5  bits: 148.8 E(85289): 2.4e-36
Smith-Waterman score: 746; 78.2% identity (78.9% similar) in 147 aa overlap (1-116:1-147)

               10        20                                        
pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQ-------------------------------
       :::::::::::::::::::::::::::::                               
NP_001 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQETGFHHVAQAALKLLSSSNPPTKASQSARIT
               10        20        30        40        50        60

      30        40        50        60        70        80         
pF1KE5 DCPECTLQENPLFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY
               70        80        90       100       110       120

      90       100       110      
pF1KE5 NRVTVMGGFKVENHTACHCSTCYYHKS
       :::::::::::::::::::::::::::
NP_001 NRVTVMGGFKVENHTACHCSTCYYHKS
              130       140       




116 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:46:27 2016 done: Mon Nov  7 21:46:28 2016
 Total Scan time:  4.050 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]