Result of FASTA (ccds) for pFN21AE5140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5140, 116 aa
  1>>>pF1KE5140 116 - 116 aa - 116 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8248+/-0.000609; mu= 13.7650+/- 0.037
 mean_var=68.1708+/-13.469, 0's: 0 Z-trim(112.7): 9  B-trim: 137 in 1/49
 Lambda= 0.155337
 statistics sampled from 13390 (13394) to 13390 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.411), width:  16
 Scan time:  1.460

The best scores are:                                      opt bits E(32554)
CCDS5007.1 CGA gene_id:1081|Hs108|chr6             ( 116)  818 190.9 1.5e-49
CCDS75492.1 CGA gene_id:1081|Hs108|chr6            ( 147)  633 149.5 5.3e-37


>>CCDS5007.1 CGA gene_id:1081|Hs108|chr6                  (116 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1003.2  bits: 190.9 E(32554): 1.5e-49
Smith-Waterman score: 818; 99.1% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPLFSQPGAPILQCMGCCFSRA
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS50 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRA
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE5 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS
               70        80        90       100       110      

>>CCDS75492.1 CGA gene_id:1081|Hs108|chr6                 (147 aa)
 initn: 633 init1: 633 opt: 633  Z-score: 777.8  bits: 149.5 E(32554): 5.3e-37
Smith-Waterman score: 746; 78.2% identity (78.9% similar) in 147 aa overlap (1-116:1-147)

               10        20                                        
pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQ-------------------------------
       :::::::::::::::::::::::::::::                               
CCDS75 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQETGFHHVAQAALKLLSSSNPPTKASQSARIT
               10        20        30        40        50        60

      30        40        50        60        70        80         
pF1KE5 DCPECTLQENPLFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY
               70        80        90       100       110       120

      90       100       110      
pF1KE5 NRVTVMGGFKVENHTACHCSTCYYHKS
       :::::::::::::::::::::::::::
CCDS75 NRVTVMGGFKVENHTACHCSTCYYHKS
              130       140       




116 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:46:27 2016 done: Mon Nov  7 21:46:27 2016
 Total Scan time:  1.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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