FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5140, 116 aa 1>>>pF1KE5140 116 - 116 aa - 116 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8248+/-0.000609; mu= 13.7650+/- 0.037 mean_var=68.1708+/-13.469, 0's: 0 Z-trim(112.7): 9 B-trim: 137 in 1/49 Lambda= 0.155337 statistics sampled from 13390 (13394) to 13390 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.411), width: 16 Scan time: 1.460 The best scores are: opt bits E(32554) CCDS5007.1 CGA gene_id:1081|Hs108|chr6 ( 116) 818 190.9 1.5e-49 CCDS75492.1 CGA gene_id:1081|Hs108|chr6 ( 147) 633 149.5 5.3e-37 >>CCDS5007.1 CGA gene_id:1081|Hs108|chr6 (116 aa) initn: 818 init1: 818 opt: 818 Z-score: 1003.2 bits: 190.9 E(32554): 1.5e-49 Smith-Waterman score: 818; 99.1% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPLFSQPGAPILQCMGCCFSRA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: CCDS50 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRA 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 YPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS 70 80 90 100 110 >>CCDS75492.1 CGA gene_id:1081|Hs108|chr6 (147 aa) initn: 633 init1: 633 opt: 633 Z-score: 777.8 bits: 149.5 E(32554): 5.3e-37 Smith-Waterman score: 746; 78.2% identity (78.9% similar) in 147 aa overlap (1-116:1-147) 10 20 pF1KE5 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQ------------------------------- ::::::::::::::::::::::::::::: CCDS75 MDYYRKYAAIFLVTLSVFLHVLHSAPDVQETGFHHVAQAALKLLSSSNPPTKASQSARIT 10 20 30 40 50 60 30 40 50 60 70 80 pF1KE5 DCPECTLQENPLFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY 70 80 90 100 110 120 90 100 110 pF1KE5 NRVTVMGGFKVENHTACHCSTCYYHKS ::::::::::::::::::::::::::: CCDS75 NRVTVMGGFKVENHTACHCSTCYYHKS 130 140 116 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:46:27 2016 done: Mon Nov 7 21:46:27 2016 Total Scan time: 1.460 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]