Result of FASTA (ccds) for pFN21AE2314
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2314, 2048 aa
  1>>>pF1KE2314 2048 - 2048 aa - 2048 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0137+/-0.00124; mu= 16.8017+/- 0.075
 mean_var=101.9900+/-20.073, 0's: 0 Z-trim(102.8): 72  B-trim: 3 in 1/51
 Lambda= 0.126998
 statistics sampled from 7049 (7106) to 7049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.218), width:  16
 Scan time:  4.950

The best scores are:                                      opt bits E(32554)
CCDS32070.1 FANCM gene_id:57697|Hs108|chr14        (2048) 13460 2478.3       0
CCDS76677.1 FANCM gene_id:57697|Hs108|chr14        (2022) 11746 2164.2       0
CCDS81802.1 FANCM gene_id:57697|Hs108|chr14        ( 669) 4425 822.7       0
CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9          ( 925)  363 78.5 1.4e-13


>>CCDS32070.1 FANCM gene_id:57697|Hs108|chr14             (2048 aa)
 initn: 13460 init1: 13460 opt: 13460  Z-score: 13320.3  bits: 2478.3 E(32554):    0
Smith-Waterman score: 13460; 99.9% identity (100.0% similar) in 2048 aa overlap (1-2048:1-2048)

               10        20        30        40        50        60
pF1KE2 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 SIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 AQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 VESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKNINQGSSSSVIESDEECAEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKNINQGSSSSVIESDEECAEIV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE2 KQTHIKPTKIVSLKKKVSKEIKKDQLKKENNHGIIDSLDNDRNSTVENIFQEDLPNDKRT
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS32 KQTHIKPTKIVSLKKKVSKEIKKDQLKKENNHGIIDSVDNDRNSTVENIFQEDLPNDKRT
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE2 SDTDEIAATCTINENVIKEPCVLLTECQFTNKSTSSLAGNVLDSGYNSFNDEKSVSSNLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SDTDEIAATCTINENVIKEPCVLLTECQFTNKSTSSLAGNVLDSGYNSFNDEKSVSSNLF
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE2 LPFEEELYIVRTDDQFYNCHSLTKEVLANVERFLSYSPPPLSGLSDLEYEIAKGTALENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPFEEELYIVRTDDQFYNCHSLTKEVLANVERFLSYSPPPLSGLSDLEYEIAKGTALENL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE2 LFLPCAEHLRSDKCTCLLSHSAVNSQQNLELNSLKCINYPSEKSCLYDIPNDNISDEPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LFLPCAEHLRSDKCTCLLSHSAVNSQQNLELNSLKCINYPSEKSCLYDIPNDNISDEPSL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE2 CDCDVHKHNQNENLVPNNRVQIHRSPAQNLVGENNHDVDNSDLPVLSTDQDESLLLFEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CDCDVHKHNQNENLVPNNRVQIHRSPAQNLVGENNHDVDNSDLPVLSTDQDESLLLFEDV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE2 NTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDELLLDNNSELQDQITRDANS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDELLLDNNSELQDQITRDANS
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE2 FKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSDDEILEHTSDSNRPLDDLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSDDEILEHTSDSNRPLDDLY
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KE2 GRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDMQNPNYVHLPLSAAKNEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDMQNPNYVHLPLSAAKNEEL
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KE2 LSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNST
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KE2 FDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTSNESEDDEIFRRKVKRAKGNVLNSPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTSNESEDDEIFRRKVKRAKGNVLNSPED
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KE2 QKNSEVDSPLHAVKKRRFPVNRSELSSSDESENFPKPCSQLEDFKVCNGNARRGIKVPKR
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS32 QKNSEVDSPLHAVKKRRFPINRSELSSSDESENFPKPCSQLEDFKVCNGNARRGIKVPKR
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KE2 QSHLKHVARKFLDDEAELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSHLKHVARKFLDDEAELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSE
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KE2 MRAIYMKSLRSPMMNNKYKMIHKTHKNINIFSQIPEQDETYLEDSFCVDEEESCKGQSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRAIYMKSLRSPMMNNKYKMIHKTHKNINIFSQIPEQDETYLEDSFCVDEEESCKGQSSE
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KE2 EEVCVDFNLITDDCFANSKKYKTRRAVMLKEMMEQNCAHSKKKLSRIILPDDSSEEENNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEVCVDFNLITDDCFANSKKYKTRRAVMLKEMMEQNCAHSKKKLSRIILPDDSSEEENNV
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KE2 NDKRESNIAVNPSTVKKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQSKQTSLNLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NDKRESNIAVNPSTVKKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQSKQTSLNLKD
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KE2 TISEVSDFKPQNHNEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSKSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TISEVSDFKPQNHNEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSKSRP
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840      1850      1860
pF1KE2 HLAGTHTSLRLAQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNR
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HLAGTHTSLRLPQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNR
             1810      1820      1830      1840      1850      1860

             1870      1880      1890      1900      1910      1920
pF1KE2 MVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFRRTKSYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFRRTKSYDS
             1870      1880      1890      1900      1910      1920

             1930      1940      1950      1960      1970      1980
pF1KE2 LLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKSEALQFYLSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKSEALQFYLSIP
             1930      1940      1950      1960      1970      1980

             1990      2000      2010      2020      2030      2040
pF1KE2 NISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVFDIQMLPNDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVFDIQMLPNDLN
             1990      2000      2010      2020      2030      2040

               
pF1KE2 QDRLKSDI
       ::::::::
CCDS32 QDRLKSDI
               

>>CCDS76677.1 FANCM gene_id:57697|Hs108|chr14             (2022 aa)
 initn: 11746 init1: 11746 opt: 11746  Z-score: 11623.2  bits: 2164.2 E(32554):    0
Smith-Waterman score: 13237; 98.6% identity (98.7% similar) in 2048 aa overlap (1-2048:1-2022)

               10        20        30        40        50        60
pF1KE2 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS76 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQ-------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KE2 ILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 -------------AVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
                    230       240       250       260       270    

              310       320       330       340       350       360
pF1KE2 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
          280       290       300       310       320       330    

              370       380       390       400       410       420
pF1KE2 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
          340       350       360       370       380       390    

              430       440       450       460       470       480
pF1KE2 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
          400       410       420       430       440       450    

              490       500       510       520       530       540
pF1KE2 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
          460       470       480       490       500       510    

              550       560       570       580       590       600
pF1KE2 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
          520       530       540       550       560       570    

              610       620       630       640       650       660
pF1KE2 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
          580       590       600       610       620       630    

              670       680       690       700       710       720
pF1KE2 SIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKP
          640       650       660       670       680       690    

              730       740       750       760       770       780
pF1KE2 AQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELE
          700       710       720       730       740       750    

              790       800       810       820       830       840
pF1KE2 VESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKNINQGSSSSVIESDEECAEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKNINQGSSSSVIESDEECAEIV
          760       770       780       790       800       810    

              850       860       870       880       890       900
pF1KE2 KQTHIKPTKIVSLKKKVSKEIKKDQLKKENNHGIIDSLDNDRNSTVENIFQEDLPNDKRT
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS76 KQTHIKPTKIVSLKKKVSKEIKKDQLKKENNHGIIDSVDNDRNSTVENIFQEDLPNDKRT
          820       830       840       850       860       870    

              910       920       930       940       950       960
pF1KE2 SDTDEIAATCTINENVIKEPCVLLTECQFTNKSTSSLAGNVLDSGYNSFNDEKSVSSNLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SDTDEIAATCTINENVIKEPCVLLTECQFTNKSTSSLAGNVLDSGYNSFNDEKSVSSNLF
          880       890       900       910       920       930    

              970       980       990      1000      1010      1020
pF1KE2 LPFEEELYIVRTDDQFYNCHSLTKEVLANVERFLSYSPPPLSGLSDLEYEIAKGTALENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LPFEEELYIVRTDDQFYNCHSLTKEVLANVERFLSYSPPPLSGLSDLEYEIAKGTALENL
          940       950       960       970       980       990    

             1030      1040      1050      1060      1070      1080
pF1KE2 LFLPCAEHLRSDKCTCLLSHSAVNSQQNLELNSLKCINYPSEKSCLYDIPNDNISDEPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LFLPCAEHLRSDKCTCLLSHSAVNSQQNLELNSLKCINYPSEKSCLYDIPNDNISDEPSL
         1000      1010      1020      1030      1040      1050    

             1090      1100      1110      1120      1130      1140
pF1KE2 CDCDVHKHNQNENLVPNNRVQIHRSPAQNLVGENNHDVDNSDLPVLSTDQDESLLLFEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CDCDVHKHNQNENLVPNNRVQIHRSPAQNLVGENNHDVDNSDLPVLSTDQDESLLLFEDV
         1060      1070      1080      1090      1100      1110    

             1150      1160      1170      1180      1190      1200
pF1KE2 NTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDELLLDNNSELQDQITRDANS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDELLLDNNSELQDQITRDANS
         1120      1130      1140      1150      1160      1170    

             1210      1220      1230      1240      1250      1260
pF1KE2 FKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSDDEILEHTSDSNRPLDDLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSDDEILEHTSDSNRPLDDLY
         1180      1190      1200      1210      1220      1230    

             1270      1280      1290      1300      1310      1320
pF1KE2 GRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDMQNPNYVHLPLSAAKNEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDMQNPNYVHLPLSAAKNEEL
         1240      1250      1260      1270      1280      1290    

             1330      1340      1350      1360      1370      1380
pF1KE2 LSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNST
         1300      1310      1320      1330      1340      1350    

             1390      1400      1410      1420      1430      1440
pF1KE2 FDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTSNESEDDEIFRRKVKRAKGNVLNSPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTSNESEDDEIFRRKVKRAKGNVLNSPED
         1360      1370      1380      1390      1400      1410    

             1450      1460      1470      1480      1490      1500
pF1KE2 QKNSEVDSPLHAVKKRRFPVNRSELSSSDESENFPKPCSQLEDFKVCNGNARRGIKVPKR
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS76 QKNSEVDSPLHAVKKRRFPINRSELSSSDESENFPKPCSQLEDFKVCNGNARRGIKVPKR
         1420      1430      1440      1450      1460      1470    

             1510      1520      1530      1540      1550      1560
pF1KE2 QSHLKHVARKFLDDEAELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QSHLKHVARKFLDDEAELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSE
         1480      1490      1500      1510      1520      1530    

             1570      1580      1590      1600      1610      1620
pF1KE2 MRAIYMKSLRSPMMNNKYKMIHKTHKNINIFSQIPEQDETYLEDSFCVDEEESCKGQSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MRAIYMKSLRSPMMNNKYKMIHKTHKNINIFSQIPEQDETYLEDSFCVDEEESCKGQSSE
         1540      1550      1560      1570      1580      1590    

             1630      1640      1650      1660      1670      1680
pF1KE2 EEVCVDFNLITDDCFANSKKYKTRRAVMLKEMMEQNCAHSKKKLSRIILPDDSSEEENNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EEVCVDFNLITDDCFANSKKYKTRRAVMLKEMMEQNCAHSKKKLSRIILPDDSSEEENNV
         1600      1610      1620      1630      1640      1650    

             1690      1700      1710      1720      1730      1740
pF1KE2 NDKRESNIAVNPSTVKKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQSKQTSLNLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NDKRESNIAVNPSTVKKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQSKQTSLNLKD
         1660      1670      1680      1690      1700      1710    

             1750      1760      1770      1780      1790      1800
pF1KE2 TISEVSDFKPQNHNEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSKSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TISEVSDFKPQNHNEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSKSRP
         1720      1730      1740      1750      1760      1770    

             1810      1820      1830      1840      1850      1860
pF1KE2 HLAGTHTSLRLAQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNR
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HLAGTHTSLRLPQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNR
         1780      1790      1800      1810      1820      1830    

             1870      1880      1890      1900      1910      1920
pF1KE2 MVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFRRTKSYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFRRTKSYDS
         1840      1850      1860      1870      1880      1890    

             1930      1940      1950      1960      1970      1980
pF1KE2 LLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKSEALQFYLSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKSEALQFYLSIP
         1900      1910      1920      1930      1940      1950    

             1990      2000      2010      2020      2030      2040
pF1KE2 NISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVFDIQMLPNDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVFDIQMLPNDLN
         1960      1970      1980      1990      2000      2010    

               
pF1KE2 QDRLKSDI
       ::::::::
CCDS76 QDRLKSDI
         2020  

>>CCDS81802.1 FANCM gene_id:57697|Hs108|chr14             (669 aa)
 initn: 4425 init1: 4425 opt: 4425  Z-score: 4381.7  bits: 822.7 E(32554):    0
Smith-Waterman score: 4425; 100.0% identity (100.0% similar) in 668 aa overlap (1-668:1-668)

               10        20        30        40        50        60
pF1KE2 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AYEAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 SIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKP
       ::::::::                                                    
CCDS81 SIFSYRDGK                                                   
                                                                   

>>CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9               (925 aa)
 initn: 169 init1: 108 opt: 363  Z-score: 357.2  bits: 78.5 E(32554): 1.4e-13
Smith-Waterman score: 403; 23.1% identity (55.6% similar) in 648 aa overlap (47-637:201-808)

         20        30        40        50        60        70      
pF1KE2 SRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVAAYEAERQLCLENGGFC
                                     : ..:..: . .    . : :   ::.   
CCDS65 LKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSD-IQIFYQEDPECQNLSENSCPP
              180       190       200        210       220         

         80        90       100        110       120       130     
pF1KE2 TSAGALWIYPTNCPVRDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFPSG
       . ..   .:    : :.:::...  :.   ::..: ::: ::::.. ..  .  . ::.:
CCDS65 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG
     230       240        250       260       270       280        

            140       150       160       170           180        
pF1KE2 ---KVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTR----KEIWCSKRVLF
          ::::.:   :.  ::  .  . .   . :  ..:: . :...    ..:  .. ...
CCDS65 QKGKVVFFANQIPVYEQQKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIII
      290       300       310          320       330       340     

      190       200       210        220            230        240 
pF1KE2 LTPQVMVNDLSRGACPAAEIKCLVI-DEAHKALGNYAYCQVV-----RELVKYTNHF-RI
       ::::..::.:..:. :.  :  :.: :: :..  .. : ...     ..:   .. . ..
CCDS65 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV
         350       360       370       380       390       400     

              250       260       270       280       290       300
pF1KE2 LALSATPG-SDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAI
       ..:.:. : .: : .....    : ..   : :.  : : .:. .  . .:   ...  .
CCDS65 IGLTASVGVGDAKNTDEALD--YICKL-CASLDASVIATVKHNLEELEQVVYKPQKF--F
         410       420         430        440       450         460

              310         320            330       340       350   
pF1KE2 QKTYIQILESFARSLIQ--RNV--LMRR---DIPNLTKYQIILARDQFRKNPSPNIVGIQ
       .:.  .: ..:   . :  :..  : .:   :. ::.. :    :.   ..    :: .:
CCDS65 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ---NREFGTQKYEQWIVTVQ
              470       480       490       500          510       

           360       370       380       390       400       410   
pF1KE2 QGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLY
       ..        :. .    .  ..   ..:...   .   . ..  :  : .: .: .   
CCDS65 KA--------CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS--EHARMKDAL---
               520       530       540       550         560       

           420       430       440       450       460       470   
pF1KE2 NHLECMFARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKK
       ..:. .:. .:   : :.. :.: : ...:   . ::..:: :      : .  : . : 
CCDS65 DYLKDFFSNVR---AAGFDEIEQ-DLTQRF---EEKLQELESV------SRDPSNENPKL
          570          580        590          600             610 

                        480       490       500         510        
pF1KE2 RD-------------ETRVMIFSSFRDSVQEIAEMLSQHQPI--IRVMTFVGHASGKSTK
       .:             :: ...: . :  :. . . .  .  .  ..   ..:... ... 
CCDS65 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT
             620       630       640       650       660       670 

      520       530        540       550       560       570       
pF1KE2 GFTQKEQLEVVKQFR-DGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRT
       :.:   :  ..  :. .: .: :..: :..::.::.. .:.: ..   . :...:  :: 
CCDS65 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-
             680       690       700       710       720       730 

       580       590                 600           610             
pF1KE2 GRKRQGRIVIILSEG----------REERIYNQS----QSNKRSIYKA----ISSNRQVL
       :: : ..  .. :..           .:...:.:    :.  .....     :..... .
CCDS65 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI
              740       750       760       770       780       790

     620       630       640       650       660       670         
pF1KE2 HFYQRSPRMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKSSIFSYRDGMRQSSLKKDWF
       .  :..:. :::  : ::                                          
CCDS65 RDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKP
              800       810       820       830       840       850




2048 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:46:06 2016 done: Sun Nov  6 19:46:07 2016
 Total Scan time:  4.950 Total Display time:  0.290

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com