FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4576, 189 aa
  1>>>pF1KB4576 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9284+/-0.000767; mu= 14.2991+/- 0.046
 mean_var=53.1420+/-10.658, 0's: 0 Z-trim(106.6): 21  B-trim: 0 in 0/49
 Lambda= 0.175936
 statistics sampled from 9075 (9083) to 9075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS7911.1 TP53I11 gene_id:9537|Hs108|chr11        ( 189) 1207 314.0 3.5e-86


>>CCDS7911.1 TP53I11 gene_id:9537|Hs108|chr11             (189 aa)
 initn: 1207 init1: 1207 opt: 1207  Z-score: 1660.6  bits: 314.0 E(32554): 3.5e-86
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB4 MAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFTIREPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAAKQPPPLMKKHSQTDLVSRLKTRKILGVGGEDDDGEVHRSKISQVLGNEIKFTIREPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 GLRVWQFVSAVLFSGIAIMALAFPDQLYDAVFDGAQVTSKTPIRLYGGALLSISLIMWNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GLRVWQFVSAVLFSGIAIMALAFPDQLYDAVFDGAQVTSKTPIRLYGGALLSISLIMWNA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 LYTAEKVIIRWTLLTEACYFGVQFLVVTATLAETGLMSLGILLLLVSRLLFVVISIYYYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LYTAEKVIIRWTLLTEACYFGVQFLVVTATLAETGLMSLGILLLLVSRLLFVVISIYYYY
              130       140       150       160       170       180

                
pF1KB4 QVGRRPKKA
       :::::::::
CCDS79 QVGRRPKKA
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:37:24 2016 done: Sat Nov  5 19:37:24 2016
 Total Scan time:  2.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]