(Circular) (Six-base) MAPSORT of: pFN21AB5000.seq Check: 1533 from: 1 to: 5317 pFN21AB5000 5317 bp With 182 enzymes: SgfI * October 20, 2009 10:59 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3127 278 Size: 53 83 186 936 1591 2468 Fragments arranged by size: 2468 1591 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2660 1937 Size: 723 4594 Acc65I G'GTAC_C Cuts at: 2638 2638 Size: 5317 AclI AA'CG_TT Cuts at: 1563 3444 3817 1563 Size: 1881 373 3063 Fragments arranged by size: 3063 1881 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2282 3380 4764 5032 1632 Size: 650 1098 1384 268 1917 Fragments arranged by size: 1917 1384 1098 650 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5120 AflIII A'CryG_T Cuts at: 1203 4216 5193 1203 Size: 3013 977 1327 Fragments arranged by size: 3013 1327 977 AgeI A'CCGG_T Cuts at: 4148 4148 Size: 5317 AhdI GACnn_n'nnGTC Cuts at: 4046 4046 Size: 5317 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5317 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5317 AlwNI CAG_nnn'CTG Cuts at: 3060 4632 3060 Size: 1572 3745 ApaLI G'TGCA_C Cuts at: 3374 4530 3374 Size: 1156 4161 ApoI r'AATT_y Cuts at: 1493 2353 2387 2626 2852 3004 5113 1493 Size: 860 34 239 226 152 2109 1697 Fragments arranged by size: 2109 1697 860 239 226 152 34 AseI AT'TA_AT Cuts at: 160 1032 3871 160 Size: 872 2839 1606 Fragments arranged by size: 2839 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5317 AvaI C'yCGr_G Cuts at: 1870 1943 2642 1870 Size: 73 699 4545 Fragments arranged by size: 4545 699 73 BamHI G'GATC_C Cuts at: 2647 3014 2647 Size: 367 4950 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2638 4093 618 Size: 325 217 627 851 1455 1842 Fragments arranged by size: 1842 1455 851 627 325 217 BanII G_rGCy'C Cuts at: 1391 2122 2341 2636 1391 Size: 731 219 295 4072 Fragments arranged by size: 4072 731 295 219 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4346 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3508 3542 1903 Size: 34 1571 34 3678 Fragments arranged by size: 3678 1571 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3209 4419 3209 Size: 1210 4107 BclI T'GATC_A Cuts at: 1548 1548 Size: 5317 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2157 2211 3928 Size: 107 122 71 631 605 485 54 1717 Cuts at: 3928 136 Size: 1525 Fragments arranged by size: 1717 1525 631 605 485 122 107 71 54 BglII A'GATC_T Cuts at: 5312 5312 Size: 5317 BlpI GC'TnA_GC Cuts at: 2734 2734 Size: 5317 Bme1580I G_kGCm'C Cuts at: 1790 3378 4534 1790 Size: 1588 1156 2573 Fragments arranged by size: 2573 1588 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5317 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2165 2219 2371 Size: 416 53 83 399 24 748 54 152 Cuts at: 2371 2443 3048 4006 442 Size: 72 605 958 1753 Fragments arranged by size: 1753 958 748 605 416 399 152 83 72 54 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5317 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2582 3977 1239 Size: 1343 1395 2579 Fragments arranged by size: 2579 1395 1343 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3442 4307 4605 3442 Size: 865 298 4154 Fragments arranged by size: 4154 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3980 882 Size: 617 2481 2219 Fragments arranged by size: 2481 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3108 493 Size: 711 1904 2702 Fragments arranged by size: 2702 1904 711 BsaBI GATnn'nnATC Cuts at: 5311 5311 Size: 5317 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2326 3124 3506 4141 Size: 53 83 186 936 793 798 382 635 Cuts at: 4141 275 Size: 1451 Fragments arranged by size: 1451 936 798 793 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3750 4148 4422 4569 4980 3750 Size: 398 274 147 411 4087 Fragments arranged by size: 4087 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5092 Fragments arranged by size: 5092 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2327 1186 Size: 1141 4176 BseYI C'CCAG_C Cuts at: 4520 5016 4520 Size: 496 4821 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4744 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2767 3528 4556 1540 Size: 275 186 766 761 1028 2301 Fragments arranged by size: 2301 1028 766 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3378 3463 4534 3378 Size: 85 1071 4161 Fragments arranged by size: 4161 1071 85 BsmI GAATG_Cn' Cuts at: 2828 2921 2828 Size: 93 5224 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2122 2341 2636 3378 3463 4534 1391 Size: 399 332 219 295 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 332 295 219 85 BspEI T'CCGG_A Cuts at: 4980 4980 Size: 5317 BspHI T'CATG_A Cuts at: 3206 4936 3206 Size: 1730 3587 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2672 844 Size: 1828 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3204 1394 Size: 429 1381 3507 Fragments arranged by size: 3507 1381 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3812 3986 65 Size: 1183 2564 174 1396 Fragments arranged by size: 2564 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3961 4148 1700 Size: 110 2151 187 2869 Fragments arranged by size: 2869 2151 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5317 BssHII G'CGCG_C Cuts at: 1925 2147 1925 Size: 222 5095 BssSI C'ACGA_G Cuts at: 3377 4389 3377 Size: 1012 4305 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5317 BstBI TT'CG_AA Cuts at: 4121 4121 Size: 5317 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5317 BstXI CCAn_nnnn'nTGG Cuts at: 2555 2555 Size: 5317 BstYI r'GATC_y Cuts at: 1972 2647 3014 3399 3416 4868 4954 4966 5312 Size: 675 367 385 17 1452 86 12 346 Cuts at: 5312 1972 Size: 1977 Fragments arranged by size: 1977 1452 675 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2232 2232 Size: 5317 BtgI C'CryG_G Cuts at: 513 1065 2004 2206 2518 513 Size: 552 939 202 312 3312 Fragments arranged by size: 3312 939 552 312 202 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4578 Fragments arranged by size: 4578 683 56 BtsI GCAGTG_nn' Cuts at: 2833 3627 3647 2833 Size: 794 20 4503 Fragments arranged by size: 4503 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5317 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5282 DraI TTT'AAA Cuts at: 2621 2621 Size: 5317 DraIII CAC_nnn'GTG Cuts at: 2451 2451 Size: 5317 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4324 809 Size: 507 3008 1802 Fragments arranged by size: 3008 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2212 2764 3653 Size: 54 1425 50 275 18 382 552 889 Cuts at: 3653 5282 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 552 382 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2764 1537 Size: 275 952 4090 Fragments arranged by size: 4090 952 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3247 1353 Size: 1894 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3904 4278 4424 387 Size: 1064 138 2315 374 146 1280 Fragments arranged by size: 2315 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2282 2582 3380 3977 4764 5032 1239 Size: 393 650 300 798 597 787 268 1524 Fragments arranged by size: 1524 798 787 650 597 393 300 268 EcoNI CCTnn'n_nnAGG Cuts at: 2528 2528 Size: 5317 EcoRI G'AATT_C Cuts at: 2353 2626 3004 2353 Size: 273 378 4666 Fragments arranged by size: 4666 378 273 FspI TGC'GCA Cuts at: 3823 3823 Size: 5317 HaeII r_GCGC'y Cuts at: 1678 4464 1678 Size: 2786 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3958 3990 4032 4064 1373 Size: 32 135 32 2386 32 42 32 2626 Fragments arranged by size: 2626 2386 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2272 2661 2907 669 Size: 988 281 334 389 246 3079 Fragments arranged by size: 3079 988 389 334 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5317 HpaI GTT'AAC Cuts at: 2272 2907 2272 Size: 635 4682 KpnI G_GTAC'C Cuts at: 2642 2642 Size: 5317 MfeI C'AATT_G Cuts at: 2916 2916 Size: 5317 MluI A'CGCG_T Cuts at: 5193 5193 Size: 5317 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4431 4615 1305 Size: 3126 184 2007 Fragments arranged by size: 3126 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3495 Fragments arranged by size: 3495 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2265 3275 3634 3793 518 Size: 648 1099 1010 359 159 2042 Fragments arranged by size: 2042 1099 1010 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2082 2733 3410 4558 4803 1606 Size: 476 651 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 651 476 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3826 Fragments arranged by size: 3826 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5317 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5317 NotI GC'GGCC_GC Cuts at: 2764 2764 Size: 5317 NspI r_CATG'y Cuts at: 1132 1229 2675 4220 1132 Size: 97 1446 1545 2229 Fragments arranged by size: 2229 1545 1446 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5317 PciI A'CATG_T Cuts at: 4216 4216 Size: 5317 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5317 PfoI T'CCnGG_A Cuts at: 2025 2025 Size: 5317 PmeI GTTT'AAAC Cuts at: 2621 2621 Size: 5317 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3386 3418 4899 4931 3386 Size: 32 1481 32 3772 Fragments arranged by size: 3772 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5317 PsiI TTA'TAA Cuts at: 2887 2887 Size: 5317 PstI C_TGCA'G Cuts at: 830 2506 2669 830 Size: 1676 163 3478 Fragments arranged by size: 3478 1676 163 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5317 SalI G'TCGA_C Cuts at: 1936 2659 1936 Size: 723 4594 SbfI CC_TGCA'GG Cuts at: 2669 2669 Size: 5317 ScaI AGT'ACT Cuts at: 3565 5277 3565 Size: 1712 3605 SfcI C'TryA_G Cuts at: 826 1045 2502 2665 3800 4481 4672 826 Size: 219 1457 163 1135 681 191 1471 Fragments arranged by size: 1471 1457 1135 681 219 191 163 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5317 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5317 SmaI CCC'GGG Cuts at: 1872 2644 1872 Size: 772 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3421 4322 4584 820 Size: 197 926 1478 901 262 1553 Fragments arranged by size: 1553 1478 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3108 493 Size: 2615 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5317 SphI G_CATG'C Cuts at: 1132 2675 1132 Size: 1543 3774 SspI AAT'ATT Cuts at: 5 52 3241 5 Size: 47 3189 2081 Fragments arranged by size: 3189 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5317 StyI C'CwwG_G Cuts at: 513 1065 2004 2524 2756 513 Size: 552 939 520 232 3074 Fragments arranged by size: 3074 939 552 520 232 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 1997 2462 3344 3361 3514 3699 4144 Size: 1255 417 465 882 17 153 185 445 Cuts at: 4144 325 Size: 1498 Fragments arranged by size: 1498 1255 882 465 445 417 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2019 3563 5275 Size: 274 80 33 51 1443 42 1544 1712 Cuts at: 5275 96 Size: 138 Fragments arranged by size: 1712 1544 1443 274 138 80 51 42 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5277 5309 5277 Size: 32 5285 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5317 XbaI T'CTAG_A Cuts at: 2653 2653 Size: 5317 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2552 2555 2552 Size: 3 5314 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5317 XmaI C'CCGG_G Cuts at: 1870 2642 1870 Size: 772 4545 XmnI GAAnn'nnTTC Cuts at: 3446 3446 Size: 5317 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3125 276 Size: 53 83 186 936 1591 2468 Fragments arranged by size: 2468 1591 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI