FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5000, 204 aa
  1>>>pF1KB5000 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8084+/-0.000695; mu= 16.4417+/- 0.042
 mean_var=61.5200+/-12.168, 0's: 0 Z-trim(109.4): 5  B-trim: 0 in 0/50
 Lambda= 0.163518
 statistics sampled from 10826 (10829) to 10826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS2640.1 RPL15 gene_id:6138|Hs108|chr3           ( 204) 1424 343.8 4.4e-95
CCDS58818.1 RPL15 gene_id:6138|Hs108|chr3          ( 145)  838 205.4 1.4e-53


>>CCDS2640.1 RPL15 gene_id:6138|Hs108|chr3                (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1820.5  bits: 343.8 E(32554): 4.4e-95
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
CCDS26 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>CCDS58818.1 RPL15 gene_id:6138|Hs108|chr3               (145 aa)
 initn: 838 init1: 838 opt: 838  Z-score: 1075.5  bits: 205.4 E(32554): 1.4e-53
Smith-Waterman score: 838; 99.2% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       .                                                           
CCDS58 MESHSHSGGSAVGQSRLTATSVSRV                                   
              130       140                                        




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:13:29 2016 done: Sat Nov  5 06:13:30 2016
 Total Scan time:  1.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]