FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3185, 425 aa 1>>>pF1KE3185 425 - 425 aa - 425 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0047+/-0.000357; mu= 18.8568+/- 0.022 mean_var=65.4173+/-12.595, 0's: 0 Z-trim(112.8): 44 B-trim: 0 in 0/53 Lambda= 0.158573 statistics sampled from 21864 (21900) to 21864 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.257), width: 16 Scan time: 8.660 The best scores are: opt bits E(85289) NP_006822 (OMIM: 608757,615803) polyribonucleotide ( 425) 2801 649.8 3.8e-186 NP_001136069 (OMIM: 608757,615803) polyribonucleot ( 361) 1502 352.6 9.5e-97 >>NP_006822 (OMIM: 608757,615803) polyribonucleotide 5'- (425 aa) initn: 2801 init1: 2801 opt: 2801 Z-score: 3463.0 bits: 649.8 E(85289): 3.8e-186 Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425) 10 20 30 40 50 60 pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR 370 380 390 400 410 420 pF1KE3 FMDLK ::::: NP_006 FMDLK >>NP_001136069 (OMIM: 608757,615803) polyribonucleotide (361 aa) initn: 2369 init1: 1492 opt: 1502 Z-score: 1857.9 bits: 352.6 E(85289): 9.5e-97 Smith-Waterman score: 2241; 84.9% identity (84.9% similar) in 425 aa overlap (1-425:1-361) 10 20 30 40 50 60 pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI :::::::::::::::::: NP_001 GPTDVGKSTVCRLLLNYA------------------------------------------ 130 190 200 210 220 230 240 pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ :::::::::::::::::::::::::::::::::::::: NP_001 ----------------------ITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ 140 150 160 170 250 260 270 280 290 300 pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD 240 250 260 270 280 290 370 380 390 400 410 420 pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR 300 310 320 330 340 350 pF1KE3 FMDLK ::::: NP_001 FMDLK 360 425 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:38:57 2016 done: Sun Nov 6 01:38:58 2016 Total Scan time: 8.660 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]