(Circular) (Six-base) MAPSORT of: pFN21AE0665.seq Check: 1542 from: 1 to: 5425 pFN21AE0665 5425 bp With 182 enzymes: SgfI * October 20, 2009 10:50 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3235 278 Size: 53 83 186 936 1699 2468 Fragments arranged by size: 2468 1699 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2768 1937 Size: 831 4594 Acc65I G'GTAC_C Cuts at: 2746 2746 Size: 5425 AclI AA'CG_TT Cuts at: 1563 3552 3925 1563 Size: 1989 373 3063 Fragments arranged by size: 3063 1989 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2437 3488 4872 5140 1632 Size: 805 1051 1384 268 1917 Fragments arranged by size: 1917 1384 1051 805 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5228 AflIII A'CryG_T Cuts at: 1203 2340 4324 5301 1203 Size: 1137 1984 977 1327 Fragments arranged by size: 1984 1327 1137 977 AgeI A'CCGG_T Cuts at: 4256 4256 Size: 5425 AhdI GACnn_n'nnGTC Cuts at: 4154 4154 Size: 5425 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5425 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2534 1184 Size: 1350 4075 AlwNI CAG_nnn'CTG Cuts at: 3168 4740 3168 Size: 1572 3853 ApaLI G'TGCA_C Cuts at: 3482 4638 3482 Size: 1156 4269 ApoI r'AATT_y Cuts at: 1493 2734 2960 3112 5221 1493 Size: 1241 226 152 2109 1697 Fragments arranged by size: 2109 1697 1241 226 152 AseI AT'TA_AT Cuts at: 160 1032 3979 160 Size: 872 2947 1606 Fragments arranged by size: 2947 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5425 AvaI C'yCGr_G Cuts at: 1870 1943 2601 2750 1870 Size: 73 658 149 4545 Fragments arranged by size: 4545 658 149 73 BamHI G'GATC_C Cuts at: 2755 3122 2755 Size: 367 5058 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2033 2746 4201 618 Size: 325 217 627 246 713 1455 1842 Fragments arranged by size: 1842 1455 713 627 325 246 217 BanII G_rGCy'C Cuts at: 1391 2744 1391 Size: 1353 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4454 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3616 3650 1903 Size: 34 1679 34 3678 Fragments arranged by size: 3678 1679 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3317 4527 3317 Size: 1210 4215 BclI T'GATC_A Cuts at: 1548 1548 Size: 5425 BfrBI ATG'CAT Cuts at: 2521 2521 Size: 5425 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4036 136 Size: 107 122 71 631 605 2364 1525 Fragments arranged by size: 2364 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2711 5420 2711 Size: 2709 2716 BlpI GC'TnA_GC Cuts at: 2842 2842 Size: 5425 Bme1580I G_kGCm'C Cuts at: 1790 3486 4642 1790 Size: 1696 1156 2573 Fragments arranged by size: 2573 1696 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5425 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2176 3156 4114 Size: 416 53 83 399 24 759 980 958 Cuts at: 4114 442 Size: 1753 Fragments arranged by size: 1753 980 958 759 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5425 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4085 1239 Size: 2846 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3550 4415 4713 3550 Size: 865 298 4262 Fragments arranged by size: 4262 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2316 2619 4088 882 Size: 617 817 303 1469 2219 Fragments arranged by size: 2219 1469 817 617 303 BsaAI yAC'GTr Cuts at: 493 1204 3216 493 Size: 711 2012 2702 Fragments arranged by size: 2702 2012 711 BsaBI GATnn'nnATC Cuts at: 2590 2596 5419 2590 Size: 6 2823 2596 Fragments arranged by size: 2823 2596 6 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3232 3614 4249 275 Size: 53 83 186 936 1699 382 635 1451 Fragments arranged by size: 1699 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3858 4256 4530 4677 5088 3858 Size: 398 274 147 411 4195 Fragments arranged by size: 4195 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2264 2294 1178 Size: 30 165 30 861 30 4309 Fragments arranged by size: 4309 861 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2267 2288 2309 1186 Size: 1081 21 21 4302 Fragments arranged by size: 4302 1081 21 21 BseYI C'CCAG_C Cuts at: 4628 5124 4628 Size: 496 4929 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4852 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2696 2875 3636 4664 1540 Size: 275 186 695 179 761 1028 2301 Fragments arranged by size: 2301 1028 761 695 275 186 179 BsiHKAI G_wGCw'C Cuts at: 2105 3486 3571 4642 2105 Size: 1381 85 1071 2888 Fragments arranged by size: 2888 1381 1071 85 BsmI GAATG_Cn' Cuts at: 2495 2936 3029 2495 Size: 441 93 4891 Fragments arranged by size: 4891 441 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2105 2744 3486 3571 4642 1391 Size: 399 315 639 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 639 399 315 85 BspEI T'CCGG_A Cuts at: 5088 5088 Size: 5425 BspHI T'CATG_A Cuts at: 3314 5044 3314 Size: 1730 3695 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2780 844 Size: 1936 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3312 1394 Size: 429 1489 3507 Fragments arranged by size: 3507 1489 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2139 3920 4094 65 Size: 1183 891 1781 174 1396 Fragments arranged by size: 1781 1396 1183 891 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4069 4256 1700 Size: 110 2259 187 2869 Fragments arranged by size: 2869 2259 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5425 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5425 BssSI C'ACGA_G Cuts at: 2496 3485 4497 2496 Size: 989 1012 3424 Fragments arranged by size: 3424 1012 989 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5425 BstBI TT'CG_AA Cuts at: 4229 4229 Size: 5425 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5425 BstYI r'GATC_y Cuts at: 1972 2591 2711 2755 3122 3507 3524 4976 5062 Size: 619 120 44 367 385 17 1452 86 Cuts at: 5062 5074 5420 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 619 385 367 346 120 86 44 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2629 513 Size: 552 939 625 3309 Fragments arranged by size: 3309 939 625 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2229 487 Size: 683 56 1003 3683 Fragments arranged by size: 3683 1003 683 56 BtsI GCAGTG_nn' Cuts at: 2941 3735 3755 2941 Size: 794 20 4611 Fragments arranged by size: 4611 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5425 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5390 DraI TTT'AAA Cuts at: 2729 2729 Size: 5425 DraIII CAC_nnn'GTG Cuts at: 2332 2332 Size: 5425 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4432 809 Size: 507 3116 1802 Fragments arranged by size: 3116 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2563 2872 3761 Size: 54 1425 50 275 18 733 309 889 Cuts at: 3761 5390 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 733 309 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2872 1537 Size: 275 1060 4090 Fragments arranged by size: 4090 1060 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2182 3355 1353 Size: 829 1173 3423 Fragments arranged by size: 3423 1173 829 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2024 2685 4012 4386 4532 387 Size: 1064 138 435 661 1327 374 146 1280 Fragments arranged by size: 1327 1280 1064 661 435 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2437 3488 4085 4872 5140 1239 Size: 393 805 1051 597 787 268 1524 Fragments arranged by size: 1524 1051 805 787 597 393 268 EcoRI G'AATT_C Cuts at: 2734 3112 2734 Size: 378 5047 FspI TGC'GCA Cuts at: 3931 3931 Size: 5425 HaeII r_GCGC'y Cuts at: 1678 4572 1678 Size: 2894 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2087 2119 2406 2438 4066 Size: 32 135 32 515 32 287 32 1628 Cuts at: 4066 4098 4140 4172 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1628 515 287 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2053 2769 3015 669 Size: 988 281 115 716 246 3079 Fragments arranged by size: 3079 988 716 281 246 115 HindIII A'AGCT_T Cuts at: 748 748 Size: 5425 HpaI GTT'AAC Cuts at: 3015 3015 Size: 5425 KpnI G_GTAC'C Cuts at: 2750 2750 Size: 5425 MfeI C'AATT_G Cuts at: 3024 3024 Size: 5425 MluI A'CGCG_T Cuts at: 5301 5301 Size: 5425 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4539 4723 1305 Size: 3234 184 2007 Fragments arranged by size: 3234 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3603 Fragments arranged by size: 3603 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2238 3383 3742 3901 518 Size: 648 1072 1145 359 159 2042 Fragments arranged by size: 2042 1145 1072 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2841 3518 4666 4911 1606 Size: 1235 677 1148 245 2120 Fragments arranged by size: 2120 1235 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3934 Fragments arranged by size: 3934 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5425 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5425 NotI GC'GGCC_GC Cuts at: 2872 2872 Size: 5425 NsiI A_TGCA'T Cuts at: 2523 2523 Size: 5425 NspI r_CATG'y Cuts at: 1132 1229 2085 2783 4328 1132 Size: 97 856 698 1545 2229 Fragments arranged by size: 2229 1545 856 698 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5425 PciI A'CATG_T Cuts at: 4324 4324 Size: 5425 PflMI CCAn_nnn'nTGG Cuts at: 1108 2332 1108 Size: 1224 4201 PmeI GTTT'AAAC Cuts at: 2729 2729 Size: 5425 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3494 3526 5007 5039 3494 Size: 32 1481 32 3880 Fragments arranged by size: 3880 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2631 1613 Size: 1018 4407 PsiI TTA'TAA Cuts at: 2995 2995 Size: 5425 PstI C_TGCA'G Cuts at: 830 2777 830 Size: 1947 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5425 SalI G'TCGA_C Cuts at: 1936 2767 1936 Size: 831 4594 SbfI CC_TGCA'GG Cuts at: 2777 2777 Size: 5425 ScaI AGT'ACT Cuts at: 3673 5385 3673 Size: 1712 3713 SexAI A'CCwGG_T Cuts at: 2328 2328 Size: 5425 SfcI C'TryA_G Cuts at: 826 1045 2773 3908 4589 4780 826 Size: 219 1728 1135 681 191 1471 Fragments arranged by size: 1728 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5425 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5425 SmaI CCC'GGG Cuts at: 1872 2603 2752 1872 Size: 731 149 4545 Fragments arranged by size: 4545 731 149 SmlI C'TyrA_G Cuts at: 820 1017 1943 3529 4430 4692 820 Size: 197 926 1586 901 262 1553 Fragments arranged by size: 1586 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3216 493 Size: 2723 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5425 SphI G_CATG'C Cuts at: 1132 2783 1132 Size: 1651 3774 SspI AAT'ATT Cuts at: 5 52 3349 5 Size: 47 3297 2081 Fragments arranged by size: 3297 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5425 StyI C'CwwG_G Cuts at: 513 1065 2004 2864 513 Size: 552 939 860 3074 Fragments arranged by size: 3074 939 860 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2607 3452 3469 3622 3807 4252 325 Size: 1255 1027 845 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1027 845 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3671 5383 96 Size: 274 80 33 51 1443 1694 1712 138 Fragments arranged by size: 1712 1694 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5385 5417 5385 Size: 32 5393 Tth111I GACn'n_nGTC Cuts at: 1316 2048 1316 Size: 732 4693 XbaI T'CTAG_A Cuts at: 2621 2761 2621 Size: 140 5285 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5425 XmaI C'CCGG_G Cuts at: 1870 2601 2750 1870 Size: 731 149 4545 Fragments arranged by size: 4545 731 149 XmnI GAAnn'nnTTC Cuts at: 3554 3554 Size: 5425 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3233 276 Size: 53 83 186 936 1699 2468 Fragments arranged by size: 2468 1699 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI