Result of FASTA (omim) for pFN21AE0615
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0615, 174 aa
  1>>>pF1KE0615 174 - 174 aa - 174 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2119+/-0.000297; mu= 15.2857+/- 0.019
 mean_var=158.6106+/-36.706, 0's: 0 Z-trim(119.9): 241  B-trim: 1988 in 1/55
 Lambda= 0.101838
 statistics sampled from 34007 (34460) to 34007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.404), width:  16
 Scan time:  5.810

The best scores are:                                      opt bits E(85289)
NP_005096 (OMIM: 274000,605313) RNA-binding protei ( 174) 1194 186.3 2.2e-47
NP_001164408 (OMIM: 137070,608030,614782) RNA-bind ( 522)  198 40.7  0.0044
XP_011544083 (OMIM: 137070,608030,614782) PREDICTE ( 524)  198 40.7  0.0045
NP_001164105 (OMIM: 137070,608030,614782) RNA-bind ( 525)  198 40.7  0.0045
NP_004951 (OMIM: 137070,608030,614782) RNA-binding ( 526)  198 40.7  0.0045
NP_001293138 (OMIM: 300907) cleavage stimulation f ( 560)  195 40.3  0.0063
NP_001316 (OMIM: 300907) cleavage stimulation fact ( 577)  195 40.3  0.0064
NP_001293135 (OMIM: 300907) cleavage stimulation f ( 597)  195 40.3  0.0065
NP_056050 (OMIM: 611968) cleavage stimulation fact ( 616)  195 40.3  0.0066


>>NP_005096 (OMIM: 274000,605313) RNA-binding protein 8A  (174 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 971.6  bits: 186.3 E(85289): 2.2e-47
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE0 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE0 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
              130       140       150       160       170    

>>NP_001164408 (OMIM: 137070,608030,614782) RNA-binding   (522 aa)
 initn: 166 init1: 116 opt: 198  Z-score: 176.2  bits: 40.7 E(85289): 0.0044
Smith-Waterman score: 198; 30.6% identity (55.3% similar) in 170 aa overlap (11-165:224-384)

                                   10        20        30        40
pF1KE0                     MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGF
                                     ::  .  .  : :     . ..  : ::: 
NP_001 DQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGRGGRGG
           200       210       220       230           240         

                 50        60        70        80        90        
pF1KE0 --GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGE
         ::..:.  ..    :   : . . . : . ..  .:: :. :..: :.. : : . : 
NP_001 MGGSDRGGFNKFGGPRD---QGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGI
     250       260          270       280       290       300      

      100               110       120       130       140          
pF1KE0 IKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC-
       ::.        :.:  ::.:: ::: . : ..    :.::.. ..:... :.::.:..  
NP_001 IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT
        310       320       330       340       350       360      

         150       160       170                                   
pF1KE0 ----FVRGPPKGKRRGGRRRSRSPDRRRR                               
           : ::  .:  :::: :                                        
NP_001 RRADFNRGGGNG--RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
        370         380       390       400       410       420    

>>XP_011544083 (OMIM: 137070,608030,614782) PREDICTED: R  (524 aa)
 initn: 166 init1: 116 opt: 198  Z-score: 176.2  bits: 40.7 E(85289): 0.0045
Smith-Waterman score: 198; 30.6% identity (55.3% similar) in 170 aa overlap (11-165:226-386)

                                   10        20        30        40
pF1KE0                     MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGF
                                     ::  .  .  : :     . ..  : ::: 
XP_011 DQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGRGGRGG
         200       210       220       230           240       250 

                 50        60        70        80        90        
pF1KE0 --GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGE
         ::..:.  ..    :   : . . . : . ..  .:: :. :..: :.. : : . : 
XP_011 MGGSDRGGFNKFGGPRD---QGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGI
             260          270       280       290       300        

      100               110       120       130       140          
pF1KE0 IKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC-
       ::.        :.:  ::.:: ::: . : ..    :.::.. ..:... :.::.:..  
XP_011 IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT
      310       320       330       340       350       360        

         150       160       170                                   
pF1KE0 ----FVRGPPKGKRRGGRRRSRSPDRRRR                               
           : ::  .:  :::: :                                        
XP_011 RRADFNRGGGNG--RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
      370       380         390       400       410       420      

>>NP_001164105 (OMIM: 137070,608030,614782) RNA-binding   (525 aa)
 initn: 166 init1: 116 opt: 198  Z-score: 176.2  bits: 40.7 E(85289): 0.0045
Smith-Waterman score: 198; 30.6% identity (55.3% similar) in 170 aa overlap (11-165:227-387)

                                   10        20        30        40
pF1KE0                     MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGF
                                     ::  .  .  : :     . ..  : ::: 
NP_001 DQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGRGGRGG
        200       210       220       230       240           250  

                 50        60        70        80        90        
pF1KE0 --GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGE
         ::..:.  ..    :   : . . . : . ..  .:: :. :..: :.. : : . : 
NP_001 MGGSDRGGFNKFGGPRD---QGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGI
            260          270       280       290       300         

      100               110       120       130       140          
pF1KE0 IKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC-
       ::.        :.:  ::.:: ::: . : ..    :.::.. ..:... :.::.:..  
NP_001 IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT
     310       320       330       340       350       360         

         150       160       170                                   
pF1KE0 ----FVRGPPKGKRRGGRRRSRSPDRRRR                               
           : ::  .:  :::: :                                        
NP_001 RRADFNRGGGNG--RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
     370       380         390       400       410       420       

>>NP_004951 (OMIM: 137070,608030,614782) RNA-binding pro  (526 aa)
 initn: 166 init1: 116 opt: 198  Z-score: 176.2  bits: 40.7 E(85289): 0.0045
Smith-Waterman score: 198; 30.6% identity (55.3% similar) in 170 aa overlap (11-165:228-388)

                                   10        20        30        40
pF1KE0                     MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGF
                                     ::  .  .  : :     . ..  : ::: 
NP_004 DQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGRGGRGG
       200       210       220       230       240           250   

                 50        60        70        80        90        
pF1KE0 --GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGE
         ::..:.  ..    :   : . . . : . ..  .:: :. :..: :.. : : . : 
NP_004 MGGSDRGGFNKFGGPRD---QGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGI
           260       270          280       290       300       310

      100               110       120       130       140          
pF1KE0 IKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC-
       ::.        :.:  ::.:: ::: . : ..    :.::.. ..:... :.::.:..  
NP_004 IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT
              320       330       340       350       360       370

         150       160       170                                   
pF1KE0 ----FVRGPPKGKRRGGRRRSRSPDRRRR                               
           : ::  .:  :::: :                                        
NP_004 RRADFNRGGGNG--RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
              380         390       400       410       420        

>>NP_001293138 (OMIM: 300907) cleavage stimulation facto  (560 aa)
 initn: 226 init1: 187 opt: 195  Z-score: 173.6  bits: 40.3 E(85289): 0.0063
Smith-Waterman score: 195; 38.8% identity (72.9% similar) in 85 aa overlap (63-147:8-90)

             40        50        60        70        80        90  
pF1KE0 KKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDK
                                     .:. .::...  .:: ..  :::::...: 
NP_001                        MAGLTVRDPAVDRSLRS--VFVGNIPYEATEEQLKDI
                                      10          20        30     

            100       110       120       130       140       150  
pF1KE0 FAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR
       :.: : . ...:  ::.::  ::: . ::.  . : .::..:::... :. . ::     
NP_001 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE
          40        50        60        70        80        90     

            160       170                                          
pF1KE0 GPPKGKRRGGRRRSRSPDRRRR                                      
                                                                   
NP_001 KNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSP
         100       110       120       130       140       150     

>>NP_001316 (OMIM: 300907) cleavage stimulation factor s  (577 aa)
 initn: 226 init1: 187 opt: 195  Z-score: 173.5  bits: 40.3 E(85289): 0.0064
Smith-Waterman score: 195; 38.8% identity (72.9% similar) in 85 aa overlap (63-147:8-90)

             40        50        60        70        80        90  
pF1KE0 KKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDK
                                     .:. .::...  .:: ..  :::::...: 
NP_001                        MAGLTVRDPAVDRSLRS--VFVGNIPYEATEEQLKDI
                                      10          20        30     

            100       110       120       130       140       150  
pF1KE0 FAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR
       :.: : . ...:  ::.::  ::: . ::.  . : .::..:::... :. . ::     
NP_001 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE
          40        50        60        70        80        90     

            160       170                                          
pF1KE0 GPPKGKRRGGRRRSRSPDRRRR                                      
                                                                   
NP_001 KNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSP
         100       110       120       130       140       150     

>>NP_001293135 (OMIM: 300907) cleavage stimulation facto  (597 aa)
 initn: 226 init1: 187 opt: 195  Z-score: 173.3  bits: 40.3 E(85289): 0.0065
Smith-Waterman score: 195; 38.8% identity (72.9% similar) in 85 aa overlap (63-147:8-90)

             40        50        60        70        80        90  
pF1KE0 KKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDK
                                     .:. .::...  .:: ..  :::::...: 
NP_001                        MAGLTVRDPAVDRSLRS--VFVGNIPYEATEEQLKDI
                                      10          20        30     

            100       110       120       130       140       150  
pF1KE0 FAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR
       :.: : . ...:  ::.::  ::: . ::.  . : .::..:::... :. . ::     
NP_001 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE
          40        50        60        70        80        90     

            160       170                                          
pF1KE0 GPPKGKRRGGRRRSRSPDRRRR                                      
                                                                   
NP_001 KNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSP
         100       110       120       130       140       150     

>>NP_056050 (OMIM: 611968) cleavage stimulation factor s  (616 aa)
 initn: 217 init1: 187 opt: 195  Z-score: 173.2  bits: 40.3 E(85289): 0.0066
Smith-Waterman score: 195; 38.8% identity (72.9% similar) in 85 aa overlap (63-147:8-90)

             40        50        60        70        80        90  
pF1KE0 KKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDK
                                     .:. .::...  .:: ..  :::::...: 
NP_056                        MSSLAVRDPAMDRSLRS--VFVGNIPYEATEEQLKDI
                                      10          20        30     

            100       110       120       130       140       150  
pF1KE0 FAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR
       :.: : . ...:  ::.::  ::: . ::.  . : .::..:::... :. . ::     
NP_056 FSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE
          40        50        60        70        80        90     

            160       170                                          
pF1KE0 GPPKGKRRGGRRRSRSPDRRRR                                      
                                                                   
NP_056 KNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSH
         100       110       120       130       140       150     




174 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:09:51 2016 done: Wed Nov  2 20:09:52 2016
 Total Scan time:  5.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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