FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0583, 272 aa
  1>>>pF1KE0583 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1217+/-0.000674; mu= 12.2087+/- 0.041
 mean_var=91.6707+/-18.310, 0's: 0 Z-trim(112.7): 4  B-trim: 16 in 1/51
 Lambda= 0.133955
 statistics sampled from 13445 (13448) to 13445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.413), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS7076.1 IL2RA gene_id:3559|Hs108|chr10          ( 272) 1895 375.5 2.2e-104
CCDS76281.1 IL2RA gene_id:3559|Hs108|chr10         ( 200)  871 177.5 6.4e-45


>>CCDS7076.1 IL2RA gene_id:3559|Hs108|chr10               (272 aa)
 initn: 1895 init1: 1895 opt: 1895  Z-score: 1987.5  bits: 375.5 E(32554): 2.2e-104
Smith-Waterman score: 1895; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KE0 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
              190       200       210       220       230       240

              250       260       270  
pF1KE0 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
       ::::::::::::::::::::::::::::::::
CCDS70 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
              250       260       270  

>>CCDS76281.1 IL2RA gene_id:3559|Hs108|chr10              (200 aa)
 initn: 887 init1: 870 opt: 871  Z-score: 920.0  bits: 177.5 E(32554): 6.4e-45
Smith-Waterman score: 1204; 73.5% identity (73.5% similar) in 272 aa overlap (1-272:1-200)

               10        20        30        40        50        60
pF1KE0 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
       :::                                                         
CCDS76 LPG---------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ---------------EEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
                          130       140       150       160        

              250       260       270  
pF1KE0 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
       ::::::::::::::::::::::::::::::::
CCDS76 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
      170       180       190       200




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:36:46 2016 done: Wed Nov  2 21:36:46 2016
 Total Scan time:  1.970 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]