Result of FASTA (ccds) for pFN21AE1595
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1595, 337 aa
  1>>>pF1KE1595 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6737+/-0.00129; mu= -12.4364+/- 0.077
 mean_var=350.3812+/-70.674, 0's: 0 Z-trim(111.6): 97  B-trim: 0 in 0/53
 Lambda= 0.068518
 statistics sampled from 12385 (12470) to 12385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.383), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS5315.1 TBP gene_id:6908|Hs108|chr6             ( 339) 2194 230.4 1.6e-60
CCDS55077.1 TBP gene_id:6908|Hs108|chr6            ( 319) 2055 216.6 2.1e-56
CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14        ( 375) 1231 135.2   8e-32


>>CCDS5315.1 TBP gene_id:6908|Hs108|chr6                  (339 aa)
 initn: 2557 init1: 1830 opt: 2194  Z-score: 1199.9  bits: 230.4 E(32554): 1.6e-60
Smith-Waterman score: 2194; 99.4% identity (99.4% similar) in 339 aa overlap (1-337:1-339)

               10        20        30        40        50        60
pF1KE1 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
               10        20        30        40        50        60

               70        80        90         100       110        
pF1KE1 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--AVAAAAVQQSTSQQATQGTSGQAPQ
       :::::::::::::::::::::::::::::::::  :::::::::::::::::::::::::
CCDS53 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQ
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE1 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE1 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KE1 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI
              250       260       270       280       290       300

      300       310       320       330       
pF1KE1 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
       :::::::::::::::::::::::::::::::::::::::
CCDS53 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
              310       320       330         

>>CCDS55077.1 TBP gene_id:6908|Hs108|chr6                 (319 aa)
 initn: 2418 init1: 1830 opt: 2055  Z-score: 1126.0  bits: 216.6 E(32554): 2.1e-56
Smith-Waterman score: 2055; 99.4% identity (99.4% similar) in 319 aa overlap (21-337:1-319)

               10        20        30        40        50        60
pF1KE1 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
                           ::::::::::::::::::::::::::::::::::::::::
CCDS55                     MTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
                                   10        20        30        40

               70        80        90         100       110        
pF1KE1 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--AVAAAAVQQSTSQQATQGTSGQAPQ
       :::::::::::::::::::::::::::::::::  :::::::::::::::::::::::::
CCDS55 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQ
               50        60        70        80        90       100

      120       130       140       150       160       170        
pF1KE1 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL
              110       120       130       140       150       160

      180       190       200       210       220       230        
pF1KE1 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV
              170       180       190       200       210       220

      240       250       260       270       280       290        
pF1KE1 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI
              230       240       250       260       270       280

      300       310       320       330       
pF1KE1 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
       :::::::::::::::::::::::::::::::::::::::
CCDS55 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
              290       300       310         

>>CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14             (375 aa)
 initn: 1366 init1: 1150 opt: 1231  Z-score: 684.8  bits: 135.2 E(32554): 8e-32
Smith-Waterman score: 1231; 59.6% identity (78.1% similar) in 342 aa overlap (1-335:33-374)

                                              10        20         
pF1KE1                               MDQNNS-LPPYAQGLASPQGAMTPGIPIFS
                                     :.:... :  : .  :. .:   :  :.::
CCDS97 SAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFS
             10        20        30        40        50        60  

      30          40        50        60            70        80   
pF1KE1 PMMPYGTGL--TPQPIQNTNSLSILEEQQRQQQQQQ----QQQQQQQQQQQQQQQQQQQQ
       :..::   .  . .:    ::   ..: . . .. .     ..  :....:   .... .
CCDS97 PVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETE
             70        80        90       100       110       120  

            90       100       110       120       130       140   
pF1KE1 QQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTP
       .....:. :. . . . :.      ... :..  ::  ..: .. : :         .. 
CCDS97 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS
            130       140       150       160       170       180  

           150       160       170       180       190       200   
pF1KE1 MTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIR
       .::.:: :: ::  :::::::::::::::.:::::: :::.:.:::::::::::::::::
CCDS97 ITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIR
            190       200       210       220       230       240  

           210       220       230       240       250       260   
pF1KE1 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVK
       :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::.
CCDS97 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVR
            250       260       270       280       290       300  

           270       280       290       300       310       320   
pF1KE1 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAF
       ::::::::::::::::::::::::::::::.:::::::::::::::::::: :.::::::
CCDS97 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAF
            310       320       330       340       350       360  

           330       
pF1KE1 ENIYPILKGFRKTT
       ::::::::::.:  
CCDS97 ENIYPILKGFKKA 
            370      




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:36:36 2016 done: Sun Nov  6 06:36:37 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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