FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1595, 337 aa 1>>>pF1KE1595 337 - 337 aa - 337 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.6737+/-0.00129; mu= -12.4364+/- 0.077 mean_var=350.3812+/-70.674, 0's: 0 Z-trim(111.6): 97 B-trim: 0 in 0/53 Lambda= 0.068518 statistics sampled from 12385 (12470) to 12385 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.383), width: 16 Scan time: 2.640 The best scores are: opt bits E(32554) CCDS5315.1 TBP gene_id:6908|Hs108|chr6 ( 339) 2194 230.4 1.6e-60 CCDS55077.1 TBP gene_id:6908|Hs108|chr6 ( 319) 2055 216.6 2.1e-56 CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14 ( 375) 1231 135.2 8e-32 >>CCDS5315.1 TBP gene_id:6908|Hs108|chr6 (339 aa) initn: 2557 init1: 1830 opt: 2194 Z-score: 1199.9 bits: 230.4 E(32554): 1.6e-60 Smith-Waterman score: 2194; 99.4% identity (99.4% similar) in 339 aa overlap (1-337:1-339) 10 20 30 40 50 60 pF1KE1 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--AVAAAAVQQSTSQQATQGTSGQAPQ ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: CCDS53 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI 250 260 270 280 290 300 300 310 320 330 pF1KE1 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT ::::::::::::::::::::::::::::::::::::::: CCDS53 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT 310 320 330 >>CCDS55077.1 TBP gene_id:6908|Hs108|chr6 (319 aa) initn: 2418 init1: 1830 opt: 2055 Z-score: 1126.0 bits: 216.6 E(32554): 2.1e-56 Smith-Waterman score: 2055; 99.4% identity (99.4% similar) in 319 aa overlap (21-337:1-319) 10 20 30 40 50 60 pF1KE1 MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ :::::::::::::::::::::::::::::::::::::::: CCDS55 MTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ 10 20 30 40 70 80 90 100 110 pF1KE1 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--AVAAAAVQQSTSQQATQGTSGQAPQ ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: CCDS55 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQ 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI 230 240 250 260 270 280 300 310 320 330 pF1KE1 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT ::::::::::::::::::::::::::::::::::::::: CCDS55 VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT 290 300 310 >>CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14 (375 aa) initn: 1366 init1: 1150 opt: 1231 Z-score: 684.8 bits: 135.2 E(32554): 8e-32 Smith-Waterman score: 1231; 59.6% identity (78.1% similar) in 342 aa overlap (1-335:33-374) 10 20 pF1KE1 MDQNNS-LPPYAQGLASPQGAMTPGIPIFS :.:... : : . :. .: : :.:: CCDS97 SAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFS 10 20 30 40 50 60 30 40 50 60 70 80 pF1KE1 PMMPYGTGL--TPQPIQNTNSLSILEEQQRQQQQQQ----QQQQQQQQQQQQQQQQQQQQ :..:: . . .: :: ..: . . .. . .. :....: .... . CCDS97 PVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETE 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 QQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTP .....:. :. . . . :. ... :.. :: ..: .. : : .. CCDS97 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 MTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIR .::.:: :: :: :::::::::::::::.:::::: :::.:.::::::::::::::::: CCDS97 ITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIR 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVK :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::. CCDS97 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVR 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE1 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAF ::::::::::::::::::::::::::::::.:::::::::::::::::::: :.:::::: CCDS97 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAF 310 320 330 340 350 360 330 pF1KE1 ENIYPILKGFRKTT ::::::::::.: CCDS97 ENIYPILKGFKKA 370 337 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:36:36 2016 done: Sun Nov 6 06:36:37 2016 Total Scan time: 2.640 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]