FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3927, 435 aa 1>>>pF1KE3927 435 - 435 aa - 435 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7476+/-0.00043; mu= 14.8063+/- 0.027 mean_var=66.1341+/-13.413, 0's: 0 Z-trim(110.7): 27 B-trim: 23 in 1/50 Lambda= 0.157711 statistics sampled from 19150 (19155) to 19150 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.225), width: 16 Scan time: 7.760 The best scores are: opt bits E(85289) NP_002544 (OMIM: 602331) origin recognition comple ( 435) 2885 665.6 6.8e-191 NP_859531 (OMIM: 602331) origin recognition comple ( 324) 1966 456.5 4.6e-128 XP_011514575 (OMIM: 602331) PREDICTED: origin reco ( 245) 1525 356.1 5.7e-98 >>NP_002544 (OMIM: 602331) origin recognition complex su (435 aa) initn: 2885 init1: 2885 opt: 2885 Z-score: 3548.1 bits: 665.6 E(85289): 6.8e-191 Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435) 10 20 30 40 50 60 pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 RLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIA 370 380 390 400 410 420 430 pF1KE3 RTVNFDIIKYLYDFL ::::::::::::::: NP_002 RTVNFDIIKYLYDFL 430 >>NP_859531 (OMIM: 602331) origin recognition complex su (324 aa) initn: 1966 init1: 1966 opt: 1966 Z-score: 2420.1 bits: 456.5 E(85289): 4.6e-128 Smith-Waterman score: 1966; 99.7% identity (100.0% similar) in 294 aa overlap (1-294:1-294) 10 20 30 40 50 60 pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV :::::::::::::::::::::::::::::::::::::::::::::::::::::. NP_859 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 ELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLD NP_859 VTGDTSSANYQDTKVNTKEHSVRK 310 320 >>XP_011514575 (OMIM: 602331) PREDICTED: origin recognit (245 aa) initn: 1525 init1: 1525 opt: 1525 Z-score: 1879.8 bits: 356.1 E(85289): 5.7e-98 Smith-Waterman score: 1525; 98.7% identity (99.1% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE3 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV :::::::::::::::::::::::::::::::::::::::::::::::: . : XP_011 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLKMQNSIKIKMRN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGLSAHTHV XP_011 NRKEM 435 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:52:12 2016 done: Sun Nov 6 08:52:13 2016 Total Scan time: 7.760 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]