FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2263, 385 aa 1>>>pF1KE2263 385 - 385 aa - 385 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8496+/-0.000348; mu= 4.7457+/- 0.022 mean_var=134.3111+/-27.620, 0's: 0 Z-trim(117.4): 28 B-trim: 52 in 1/59 Lambda= 0.110667 statistics sampled from 29370 (29396) to 29370 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.345), width: 16 Scan time: 8.920 The best scores are: opt bits E(85289) NP_001020280 (OMIM: 142230) hematopoietic progenit ( 385) 2458 403.8 3.6e-112 NP_001764 (OMIM: 142230) hematopoietic progenitor ( 328) 2053 339.1 9.1e-93 >>NP_001020280 (OMIM: 142230) hematopoietic progenitor c (385 aa) initn: 2458 init1: 2458 opt: 2458 Z-score: 2134.8 bits: 403.8 E(85289): 3.6e-112 Smith-Waterman score: 2458; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ 310 320 330 340 350 360 370 380 pF1KE2 ENGTGQATSRNGHSARQHVVADTEL ::::::::::::::::::::::::: NP_001 ENGTGQATSRNGHSARQHVVADTEL 370 380 >>NP_001764 (OMIM: 142230) hematopoietic progenitor cell (328 aa) initn: 2047 init1: 2047 opt: 2053 Z-score: 1786.4 bits: 339.1 E(85289): 9.1e-93 Smith-Waterman score: 2053; 99.1% identity (99.4% similar) in 328 aa overlap (1-328:1-328) 10 20 30 40 50 60 pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ :::::::::::::::::::::::: .: NP_001 LAVLGITGYFLMNRRSWSPTGERLELEP 310 320 385 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:30:13 2016 done: Sun Nov 6 20:30:14 2016 Total Scan time: 8.920 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]