FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2263, 385 aa 1>>>pF1KE2263 385 - 385 aa - 385 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4369+/-0.000856; mu= 6.7145+/- 0.051 mean_var=113.7255+/-22.712, 0's: 0 Z-trim(109.7): 37 B-trim: 5 in 1/52 Lambda= 0.120267 statistics sampled from 11056 (11079) to 11056 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.34), width: 16 Scan time: 3.120 The best scores are: opt bits E(32554) CCDS31011.1 CD34 gene_id:947|Hs108|chr1 ( 385) 2458 437.2 1.2e-122 CCDS31012.1 CD34 gene_id:947|Hs108|chr1 ( 328) 2053 366.9 1.5e-101 >>CCDS31011.1 CD34 gene_id:947|Hs108|chr1 (385 aa) initn: 2458 init1: 2458 opt: 2458 Z-score: 2315.5 bits: 437.2 E(32554): 1.2e-122 Smith-Waterman score: 2458; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ 310 320 330 340 350 360 370 380 pF1KE2 ENGTGQATSRNGHSARQHVVADTEL ::::::::::::::::::::::::: CCDS31 ENGTGQATSRNGHSARQHVVADTEL 370 380 >>CCDS31012.1 CD34 gene_id:947|Hs108|chr1 (328 aa) initn: 2047 init1: 2047 opt: 2053 Z-score: 1936.8 bits: 366.9 E(32554): 1.5e-101 Smith-Waterman score: 2053; 99.1% identity (99.4% similar) in 328 aa overlap (1-328:1-328) 10 20 30 40 50 60 pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ :::::::::::::::::::::::: .: CCDS31 LAVLGITGYFLMNRRSWSPTGERLELEP 310 320 385 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:30:12 2016 done: Sun Nov 6 20:30:13 2016 Total Scan time: 3.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]