Result of FASTA (ccds) for pFN21AE2079
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2079, 752 aa
  1>>>pF1KE2079 752 - 752 aa - 752 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8076+/-0.00103; mu= 18.2283+/- 0.062
 mean_var=113.9767+/-23.267, 0's: 0 Z-trim(106.7): 168  B-trim: 346 in 2/50
 Lambda= 0.120134
 statistics sampled from 8958 (9162) to 8958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.281), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS4728.1 C2 gene_id:717|Hs108|chr6               ( 752) 5174 908.7       0
CCDS54991.1 C2 gene_id:717|Hs108|chr6              ( 620) 4104 723.2 3.1e-208
CCDS75428.1 C2 gene_id:717|Hs108|chr6              ( 506) 3171 561.4 1.3e-159
CCDS56416.1 C2 gene_id:717|Hs108|chr6              ( 538) 2902 514.8 1.4e-145
CCDS75427.1 C2 gene_id:717|Hs108|chr6              ( 328) 2007 359.4 5.1e-99
CCDS4729.1 CFB gene_id:629|Hs108|chr6              ( 764) 1849 332.4 1.6e-90
CCDS55189.1 CSMD1 gene_id:64478|Hs108|chr8         (3564)  360 75.0 2.3e-12
CCDS60082.1 CSMD2 gene_id:114784|Hs108|chr1        (3631)  341 71.7 2.3e-11


>>CCDS4728.1 C2 gene_id:717|Hs108|chr6                    (752 aa)
 initn: 5174 init1: 5174 opt: 5174  Z-score: 4853.2  bits: 908.7 E(32554):    0
Smith-Waterman score: 5174; 100.0% identity (100.0% similar) in 752 aa overlap (1-752:1-752)

               10        20        30        40        50        60
pF1KE2 MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 EPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGME
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 RELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 HVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 SPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 RDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 DQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRS
              670       680       690       700       710       720

              730       740       750  
pF1KE2 KVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
       ::::::::::::::::::::::::::::::::
CCDS47 KVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
              730       740       750  

>>CCDS54991.1 C2 gene_id:717|Hs108|chr6                   (620 aa)
 initn: 4199 init1: 4104 opt: 4104  Z-score: 3852.0  bits: 723.2 E(32554): 3.1e-208
Smith-Waterman score: 4104; 100.0% identity (100.0% similar) in 605 aa overlap (148-752:16-620)

       120       130       140       150       160       170       
pF1KE2 EDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRC
                                     ::::::::::::::::::::::::::::::
CCDS54                MGPLMVLFCLLFLYPAGHCPNPGISLGAVRTGFRFGHGDKVRYRC
                              10        20        30        40     

       180       190       200       210       220       230       
pF1KE2 SSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKT
          50        60        70        80        90       100     

       240       250       260       270       280       290       
pF1KE2 KESLGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KESLGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIIT
         110       120       130       140       150       160     

       300       310       320       330       340       350       
pF1KE2 FASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLL
         170       180       190       200       210       220     

       360       370       380       390       400       410       
pF1KE2 GMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLD
         230       240       250       260       270       280     

       420       430       440       450       460       470       
pF1KE2 VDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQER
         290       300       310       320       330       340     

       480       490       500       510       520       530       
pF1KE2 TPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEK
         350       360       370       380       390       400     

       540       550       560       570       580       590       
pF1KE2 AVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQG
         410       420       430       440       450       460     

       600       610       620       630       640       650       
pF1KE2 STCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 STCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVRE
         470       480       490       500       510       520     

       660       670       680       690       700       710       
pF1KE2 VVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRA
         530       540       550       560       570       580     

       720       730       740       750  
pF1KE2 PRSKVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
       :::::::::::::::::::::::::::::::::::
CCDS54 PRSKVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
         590       600       610       620

>>CCDS75428.1 C2 gene_id:717|Hs108|chr6                   (506 aa)
 initn: 3171 init1: 3171 opt: 3171  Z-score: 2979.2  bits: 561.4 E(32554): 1.3e-159
Smith-Waterman score: 3171; 100.0% identity (100.0% similar) in 469 aa overlap (284-752:38-506)

           260       270       280       290       300       310   
pF1KE2 NLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNS
                                     ::::::::::::::::::::::::::::::
CCDS75 AAPRILCSRGLRSGSARATGSGVERSPSAAIFSFEINVSVAIITFASEPKVLMSVLNDNS
        10        20        30        40        50        60       

           320       330       340       350       360       370   
pF1KE2 RDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIIL
        70        80        90       100       110       120       

           380       390       400       410       420       430   
pF1KE2 LTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGE
       130       140       150       160       170       180       

           440       450       460       470       480       490   
pF1KE2 RHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPWHVTIKPKSQETCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPWHVTIKPKSQETCR
       190       200       210       220       230       240       

           500       510       520       530       540       550   
pF1KE2 GALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQG
       250       260       270       280       290       300       

           560       570       580       590       600       610   
pF1KE2 ILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSV
       310       320       330       340       350       360       

           620       630       640       650       660       670   
pF1KE2 PAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDES
       370       380       390       400       410       420       

           680       690       700       710       720       730   
pF1KE2 PCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLF
       430       440       450       460       470       480       

           740       750  
pF1KE2 RMQPWLRQHLGDVLNFLPL
       :::::::::::::::::::
CCDS75 RMQPWLRQHLGDVLNFLPL
       490       500      

>>CCDS56416.1 C2 gene_id:717|Hs108|chr6                   (538 aa)
 initn: 2902 init1: 2902 opt: 2902  Z-score: 2726.9  bits: 514.8 E(32554): 1.4e-145
Smith-Waterman score: 3352; 85.0% identity (85.0% similar) in 605 aa overlap (148-752:25-538)

       120       130       140       150       160       170       
pF1KE2 EDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRC
                                     ::::::::::::::::::::::::::::::
CCDS56       MRALCIRETCSSELGFSRNWSRRKAGHCPNPGISLGAVRTGFRFGHGDKVRYRC
                     10        20        30        40        50    

       180       190       200       210       220       230       
pF1KE2 SSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKT
           60        70        80        90       100       110    

       240       250       260       270       280       290       
pF1KE2 KESLGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIIT
       :                                                           
CCDS56 K-----------------------------------------------------------
                                                                   

       300       310       320       330       340       350       
pF1KE2 FASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLL
                                       ::::::::::::::::::::::::::::
CCDS56 --------------------------------DHENGTGTNTYAALNSVYLMMNNQMRLL
                                         120       130       140   

       360       370       380       390       400       410       
pF1KE2 GMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLD
           150       160       170       180       190       200   

       420       430       440       450       460       470       
pF1KE2 VDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQER
           210       220       230       240       250       260   

       480       490       500       510       520       530       
pF1KE2 TPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEK
           270       280       290       300       310       320   

       540       550       560       570       580       590       
pF1KE2 AVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQG
           330       340       350       360       370       380   

       600       610       620       630       640       650       
pF1KE2 STCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 STCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVRE
           390       400       410       420       430       440   

       660       670       680       690       700       710       
pF1KE2 VVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRA
           450       460       470       480       490       500   

       720       730       740       750  
pF1KE2 PRSKVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
       :::::::::::::::::::::::::::::::::::
CCDS56 PRSKVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
           510       520       530        

>>CCDS75427.1 C2 gene_id:717|Hs108|chr6                   (328 aa)
 initn: 2007 init1: 2007 opt: 2007  Z-score: 1891.2  bits: 359.4 E(32554): 5.1e-99
Smith-Waterman score: 2009; 88.4% identity (93.3% similar) in 328 aa overlap (1-316:1-328)

               10        20        30        40        50        60
pF1KE2 MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKES
              190       200       210       220       230       240

              250       260       270       280                290 
pF1KE2 LGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFE---------INV
       :::::::::::::::::::::::::::::::::::::::::::. . :         ...
CCDS75 LGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRVRNQESACSRGLPVLTI
              250       260       270       280       290       300

             300          310       320       330       340        
pF1KE2 SVAIITFASEP---KVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYL
       :. .. .   :   ..:. :..: .. :                                
CCDS75 SLCLLPLLRTPLTAHLLQEVFSDYTHAM                                
              310       320                                        

>>CCDS4729.1 CFB gene_id:629|Hs108|chr6                   (764 aa)
 initn: 1524 init1: 548 opt: 1849  Z-score: 1738.6  bits: 332.4 E(32554): 1.6e-90
Smith-Waterman score: 1849; 39.8% identity (69.6% similar) in 757 aa overlap (17-750:30-764)

                            10        20         30        40      
pF1KE2              MGPLMVLFCLLFLYPGLADSAPSCP-QNVNISGGTFTLSHGWAPGSL
                                    ::    ::  ..:.:.::.: : .    :. 
CCDS47 MGSNLSPQLCLMPFILGLLSGGVTTTPWSLARPQGSCSLEGVEIKGGSFRLLQ---EGQA
               10        20        30        40        50          

         50        60         70          80        90       100   
pF1KE2 LTYSCPQGLYPSPA-SRLCKSSGQWQT--PGATRSLSKAVCKPVRCPAPVSFENGIYTPR
       : : ::.:.:: :. .: :.:.:.:.:      ... :: :. ..:: : .:::: : ::
CCDS47 LEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPR
        60        70        80        90       100       110       

           110       120       130       140       150       160   
pF1KE2 LGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRT
          : :. ..::.: ::. ::::  : :. :: :.:.::.::::::.: :::: .:. ..
CCDS47 SPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKV
       120       130       140       150       160       170       

           170       180       190       200       210       220   
pF1KE2 GFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTS
       : ..   :.: :.:: .:.: ::..: :: .: :::::: :.. . :: :..:: :. .:
CCDS47 GSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSS
       180       190       200       210       220       230       

           230         240       250       260       270       280 
pF1KE2 FSHMLGATNPT--QKTKESLGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMV
       ... . ...    .   :.  ::: .. :: .:.::.:: :.:.. ..:   :.    ..
CCDS47 LTETIEGVDAEDGHGPGEQQKRKIVLDPSGSMNIYLVLDGSDSIGASNFTGAKKCLVNLI
       240       250       260       270       280       290       

             290       300       310       320       330       340 
pF1KE2 DRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYA
       ... :. ..   ...:.:. ::. ..: . .: .   : ..:.. ::.::.  .::::  
CCDS47 EKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKK
       300       310       320       330       340       350       

             350       360       370       380       390       400 
pF1KE2 ALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQK
       ::..:: ::.       .   .:.. ::.:::.:::  ::::.: :..:.::..: :.. 
CCDS47 ALQAVYSMMSWPD---DVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKD
       360       370          380       390       400       410    

                 410       420       430       440       450       
pF1KE2 RN----DYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSK
       :.    ::::.:..::: : :.  ..: :.::::.:.:.: ..: . :..:: .:.: :.
CCDS47 RKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQ
          420       430        440       450       460       470   

       460       470       480           490       500       510   
pF1KE2 LTDTICGVGNMSANASDQERTPWHV---TIKP-KSQETCRGALISDQWVLTAAHCFR-DG
        . ..::.     ...: .. ::..   .:.: :..:.: ::..:. .::::::::  : 
CCDS47 -SLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD
            480       490       500       510       520       530  

            520       530       540       550       560       570  
pF1KE2 NDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVK
       ..::. .:.::  :    ... :: ... :.... .::. :: :::  :.::.:: .:.:
CCDS47 KEHSI-KVSVGGEK----RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK
             540           550       560       570       580       

            580       590       600       610       620            
pF1KE2 MSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLN---INL
       ..   ::::::::  .. ::: :  .::.....:::  :.. : ::. . .::.   . .
CCDS47 YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYI
       590       600       610       620       630       640       

     630       640       650       660          670       680      
pF1KE2 KMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSG---TQEDESPCKGESGGAVFLE
       : : .  :: :  .:    . .. :. :::: .:::.:      : . :.:.::: ....
CCDS47 KNGDKKGSC-ERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH
       650        660       670       680       690       700      

        690       700       710       720        730       740     
pF1KE2 RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPP-PRDFHINLFRMQPWLRQHLGD
       .: ::.:::..:::. . :     ::...   ...::   ::::::::.. :::...: :
CCDS47 KRSRFIQVGVISWGVVDVC-----KNQKR---QKQVPAHARDFHINLFQVLPWLKEKLQD
        710       720            730          740       750        

          750  
pF1KE2 V-LNFLPL
         :.::  
CCDS47 EDLGFL  
      760      

>>CCDS55189.1 CSMD1 gene_id:64478|Hs108|chr8              (3564 aa)
 initn: 597 init1: 165 opt: 360  Z-score: 335.5  bits: 75.0 E(32554): 2.3e-12
Smith-Waterman score: 380; 31.7% identity (56.2% similar) in 224 aa overlap (20-231:3028-3238)

                          10        20        30        40         
pF1KE2            MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLT-
                                     .::.:  ..   :   ::..:   :. .: 
CCDS55 SSSVIYACWEGYKTSGLMTRHCTANGTWTGTAPDC--TIISCGDPGTLANGIQFGTDFTF
      3000      3010      3020      3030        3040      3050     

            50           60        70        80        90       100
pF1KE2 -----YSCPQGLYP---SPASRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIY
            :.:  :      . :.  : ..:.:. :      :: ::: : :: :   .::  
CCDS55 NKTVSYQCNPGYVMEAVTSATIRCTKDGRWN-P------SKPVCKAVLCPQPPPVQNG--
        3060      3070      3080             3090      3100        

              110       120       130       140       150       160
pF1KE2 TPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGA
       : . ...  :...:. : ::. :  : . .:.  :.: ::   :      : .:::   .
CCDS55 TVEGSDFRWGSSISYSCMDGYQLSHSAILSCEGRGVWKGEIPQCL--PVFCGDPGIPAEG
       3110      3120      3130      3140      3150        3160    

              170       180       190       200       210       220
pF1KE2 VRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPAL
         .:  : . ..: ..:.: ..:.:::.: ::..:.::: .: : .:     :.  .: .
CCDS55 RLSGKSFTYKSEVFFQCKSPFILVGSSRRVCQADGTWSGIQPTCIDPAHNTCPDPGTPHF
         3170      3180      3190      3200      3210      3220    

                 230       240       250       260       270       
pF1KE2 G---TSFSHMLGATNPTQKTKESLGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESA
       :   .: .. .:.:                                              
CCDS55 GIQNSSRGYEVGSTVFFRCRKGYHIQGSTTRTCLANLTWSGIQTECIPHACRQPETPAHA
         3230      3240      3250      3260      3270      3280    

>>CCDS60082.1 CSMD2 gene_id:114784|Hs108|chr1             (3631 aa)
 initn: 844 init1: 183 opt: 341  Z-score: 317.6  bits: 71.7 E(32554): 2.3e-11
Smith-Waterman score: 341; 33.9% identity (56.0% similar) in 168 aa overlap (39-204:2874-3032)

       10        20        30        40        50        60        
pF1KE2 CLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPASRL-CKSS
                                     : .. :. ..: : .:.:   .  : :...
CCDS60 SDMLPTCRIINCTDPGHQENSVRQVHASGPHRFSFGTTVSYRCNHGFYLLGTPVLSCQGD
          2850      2860      2870      2880      2890      2900   

        70        80        90       100       110       120       
pF1KE2 GQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSP
       : :. :       .  :  : :  : :  .. ..    :: ::. : . :     : :. 
CCDS60 GTWDRP-------RPQCLLVSCGHPGSPPHSQMSG--DSYTVGAVVRYSCIGKRTLVGNS
                 2910      2920      2930        2940      2950    

       130       140        150       160       170       180      
pF1KE2 VRQCRPNGMWDGETAVCDN-GAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTGS
       .:.:  .: : :    :.. ..: : .:::   ..: :  :  :  .:. : .. :: ::
CCDS60 TRMCGLDGHWTGSLPHCSGTSVGVCGDPGIPAHGIRLGDSFDPGTVMRFSCEAGHVLRGS
         2960      2970      2980      2990      3000      3010    

        190       200       210       220       230       240      
pF1KE2 SERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKESLGRKIQ
       ::: ::.:: :::..: :                                          
CCDS60 SERTCQANGSWSGSQPECGVISCGNPGTPSNARVVFSDGLVFSSSIVYECREGYYATGLL
         3020      3030      3040      3050      3060      3070    




752 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:30:54 2016 done: Sun Nov  6 20:30:54 2016
 Total Scan time:  2.310 Total Display time:  0.100

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com