FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2048, 669 aa 1>>>pF1KE2048 669 - 669 aa - 669 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.7292+/-0.00131; mu= -2.7989+/- 0.079 mean_var=408.3561+/-84.889, 0's: 0 Z-trim(110.4): 85 B-trim: 0 in 0/53 Lambda= 0.063468 statistics sampled from 11545 (11607) to 11545 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.357), width: 16 Scan time: 4.190 The best scores are: opt bits E(32554) CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 ( 669) 4342 412.5 9.5e-115 CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 ( 156) 979 103.9 1.8e-22 CCDS55775.1 RBM4 gene_id:100526737|Hs108|chr11 ( 118) 743 82.2 4.7e-16 CCDS55773.1 RBM14 gene_id:10432|Hs108|chr11 ( 119) 743 82.2 4.7e-16 CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 ( 339) 743 82.7 9.5e-16 >>CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 (669 aa) initn: 4342 init1: 4342 opt: 4342 Z-score: 2173.6 bits: 412.5 E(32554): 9.5e-115 Smith-Waterman score: 4342; 100.0% identity (100.0% similar) in 669 aa overlap (1-669:1-669) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ 610 620 630 640 650 660 pF1KE2 MHSGYQRRM ::::::::: CCDS81 MHSGYQRRM >>CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 (156 aa) initn: 979 init1: 979 opt: 979 Z-score: 517.1 bits: 103.9 E(32554): 1.8e-22 Smith-Waterman score: 979; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG :::::::::::::::::::::::::::::: CCDS55 KEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV 130 140 150 >>CCDS55775.1 RBM4 gene_id:100526737|Hs108|chr11 (118 aa) initn: 743 init1: 743 opt: 743 Z-score: 401.8 bits: 82.2 E(32554): 4.7e-16 Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGGMCVG 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG >>CCDS55773.1 RBM14 gene_id:10432|Hs108|chr11 (119 aa) initn: 743 init1: 743 opt: 743 Z-score: 401.7 bits: 82.2 E(32554): 4.7e-16 Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG >>CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 (339 aa) initn: 818 init1: 743 opt: 743 Z-score: 396.2 bits: 82.7 E(32554): 9.5e-16 Smith-Waterman score: 781; 50.5% identity (62.9% similar) in 321 aa overlap (1-319:1-280) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------- 70 80 90 100 110 130 140 150 160 170 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-GT :::..:.:::. . .::.. ::: . : : . : CCDS55 ------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDR 120 130 140 150 180 190 200 210 220 230 pF1KE2 GGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR .: : : . .... :. .: : .: . : . .: : : : : CCDS55 SGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRCR 160 170 180 190 200 240 250 260 270 280 290 pF1KE2 AQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAA : : :: :. :.. ..: :.:: :: .: :.: .:: CCDS55 AARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAAA 210 220 230 240 250 300 310 320 330 340 350 pF1KE2 ASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGV ... . ..: .:.. : :: CCDS55 TAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSL 260 270 280 290 300 310 669 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:32:16 2016 done: Sun Nov 6 20:32:17 2016 Total Scan time: 4.190 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]