FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1882, 401 aa 1>>>pF1KE1882 401 - 401 aa - 401 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3361+/-0.000382; mu= 13.2031+/- 0.024 mean_var=114.2943+/-22.778, 0's: 0 Z-trim(115.0): 40 B-trim: 47 in 1/57 Lambda= 0.119967 statistics sampled from 25099 (25136) to 25099 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.295), width: 16 Scan time: 9.290 The best scores are: opt bits E(85289) NP_001248342 (OMIM: 607376) dynactin subunit 2 iso ( 401) 2522 447.5 2.6e-125 NP_001248341 (OMIM: 607376) dynactin subunit 2 iso ( 403) 2508 445.1 1.4e-124 NP_006391 (OMIM: 607376) dynactin subunit 2 isofor ( 406) 2502 444.1 2.9e-124 XP_011536063 (OMIM: 607376) PREDICTED: dynactin su ( 314) 1947 347.9 2e-95 >>NP_001248342 (OMIM: 607376) dynactin subunit 2 isoform (401 aa) initn: 2522 init1: 2522 opt: 2522 Z-score: 2370.7 bits: 447.5 E(85289): 2.6e-125 Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401) 10 20 30 40 50 60 pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 DQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 EDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMI 310 320 330 340 350 360 370 380 390 400 pF1KE1 ANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK ::::::::::::::::::::::::::::::::::::::::: NP_001 ANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 370 380 390 400 >>NP_001248341 (OMIM: 607376) dynactin subunit 2 isoform (403 aa) initn: 2281 init1: 2281 opt: 2508 Z-score: 2357.6 bits: 445.1 E(85289): 1.4e-124 Smith-Waterman score: 2508; 99.5% identity (99.5% similar) in 403 aa overlap (1-401:1-403) 10 20 30 40 50 pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE--ELTSTSVEHIIVNPNAAYDKFK :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: NP_001 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 KIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 LQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 MIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK ::::::::::::::::::::::::::::::::::::::::::: NP_001 MIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 370 380 390 400 >>NP_006391 (OMIM: 607376) dynactin subunit 2 isoform 1 (406 aa) initn: 2508 init1: 2281 opt: 2502 Z-score: 2351.9 bits: 444.1 E(85289): 2.9e-124 Smith-Waterman score: 2502; 98.8% identity (98.8% similar) in 406 aa overlap (1-401:1-406) 10 20 30 40 50 pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD ::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_006 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 EVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELE 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 TAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAK 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 HKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 HKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDT 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 TQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK :::::::::::::::::::::::::::::::::::::::::::::: NP_006 TQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 370 380 390 400 >>XP_011536063 (OMIM: 607376) PREDICTED: dynactin subuni (314 aa) initn: 1947 init1: 1947 opt: 1947 Z-score: 1834.3 bits: 347.9 E(85289): 2e-95 Smith-Waterman score: 1947; 100.0% identity (100.0% similar) in 314 aa overlap (88-401:1-314) 60 70 80 90 100 110 pF1KE1 KDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEV :::::::::::::::::::::::::::::: XP_011 MLGEGLGVKETPQQKYQRLLHEVQELTTEV 10 20 30 120 130 140 150 160 170 pF1KE1 EKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 LLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETA 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 VRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHK 160 170 180 190 200 210 300 310 320 330 340 350 pF1KE1 ASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQ 220 230 240 250 260 270 360 370 380 390 400 pF1KE1 QMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK :::::::::::::::::::::::::::::::::::::::::::: XP_011 QMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 280 290 300 310 401 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:03:12 2016 done: Sun Nov 6 21:03:13 2016 Total Scan time: 9.290 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]