FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7924, 346 aa 1>>>pF1KB7924 346 - 346 aa - 346 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.8672+/-0.000832; mu= 4.2358+/- 0.051 mean_var=230.2124+/-45.749, 0's: 0 Z-trim(116.2): 13 B-trim: 0 in 0/55 Lambda= 0.084530 statistics sampled from 16802 (16815) to 16802 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.517), width: 16 Scan time: 3.390 The best scores are: opt bits E(32554) CCDS47885.1 E2F5 gene_id:1875|Hs108|chr8 ( 346) 2297 291.9 5.1e-79 CCDS47886.1 E2F5 gene_id:1875|Hs108|chr8 ( 345) 2280 289.9 2.1e-78 CCDS55254.1 E2F5 gene_id:1875|Hs108|chr8 ( 185) 1231 161.7 4.4e-40 CCDS32464.1 E2F4 gene_id:1874|Hs108|chr16 ( 413) 1109 147.1 2.4e-35 CCDS236.1 E2F2 gene_id:1870|Hs108|chr1 ( 437) 518 75.1 1.2e-13 CCDS4545.1 E2F3 gene_id:1871|Hs108|chr6 ( 465) 481 70.6 3e-12 CCDS58999.1 E2F3 gene_id:1871|Hs108|chr6 ( 334) 470 69.1 5.9e-12 >>CCDS47885.1 E2F5 gene_id:1875|Hs108|chr8 (346 aa) initn: 2297 init1: 2297 opt: 2297 Z-score: 1532.1 bits: 291.9 E(32554): 5.1e-79 Smith-Waterman score: 2297; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346) 10 20 30 40 50 60 pF1KB7 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLGLLTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLGLLTT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 KFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 CNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 CFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 FPVPPPDDLTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 FPVPPPDDLTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISG 250 260 270 280 290 300 310 320 330 340 pF1KB7 DIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY :::::::::::::::::::::::::::::::::::::::::::::: CCDS47 DIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY 310 320 330 340 >>CCDS47886.1 E2F5 gene_id:1875|Hs108|chr8 (345 aa) initn: 1947 init1: 1947 opt: 2280 Z-score: 1520.9 bits: 289.9 E(32554): 2.1e-78 Smith-Waterman score: 2280; 99.7% identity (99.7% similar) in 346 aa overlap (1-346:1-345) 10 20 30 40 50 60 pF1KB7 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLGLLTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLGLLTT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 KFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 CNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 CFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 FPVPPPDDLTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISG :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS47 FPVPPPDDLTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISS-GSISG 250 260 270 280 290 310 320 330 340 pF1KB7 DIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY :::::::::::::::::::::::::::::::::::::::::::::: CCDS47 DIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY 300 310 320 330 340 >>CCDS55254.1 E2F5 gene_id:1875|Hs108|chr8 (185 aa) initn: 1231 init1: 1231 opt: 1231 Z-score: 833.2 bits: 161.7 E(32554): 4.4e-40 Smith-Waterman score: 1231; 100.0% identity (100.0% similar) in 185 aa overlap (162-346:1-185) 140 150 160 170 180 190 pF1KB7 YLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQ :::::::::::::::::::::::::::::: CCDS55 MDDSINNRFSYVTHEDICNCFNGDTLLAIQ 10 20 30 200 210 220 230 240 250 pF1KB7 APSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 APSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQ 40 50 60 70 80 90 260 270 280 290 300 310 pF1KB7 PSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISGDIIDELMSSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISGDIIDELMSSDV 100 110 120 130 140 150 320 330 340 pF1KB7 FPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY ::::::::::::::::::::::::::::::::::: CCDS55 FPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY 160 170 180 >>CCDS32464.1 E2F4 gene_id:1874|Hs108|chr16 (413 aa) initn: 1065 init1: 864 opt: 1109 Z-score: 748.1 bits: 147.1 E(32554): 2.4e-35 Smith-Waterman score: 1109; 62.3% identity (75.8% similar) in 297 aa overlap (33-323:6-295) 10 20 30 40 50 60 pF1KB7 AAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLGLLTTKF :: :::: : :::::::::::::: CCDS32 MAEAGPQAPPPP------GTPSRHEKSLGLLTTKF 10 20 70 80 90 100 110 120 pF1KB7 VSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCN ::::::::::::::: ::::::::::::::::::::::: :::::::::::::::: ::: CCDS32 VSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCN 30 40 50 60 70 80 130 140 150 160 170 180 pF1KB7 TKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCF :.:. :.: ::::::.:. .:.::::.:.:.::::.:: .: :. ..:::::::: :: CCDS32 TREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICRCF 90 100 110 120 130 140 190 200 210 220 230 240 pF1KB7 NGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFP :::::::.:::::.::::::: : ::::::::.::: ::::.:::.:::. :: ::. : CCDS32 AGDTLLAIRAPSGTSLEVPIPE-GLNGQKKYQIHLKSVSGPIEVLLVNKEAWSSPPVAVP 150 160 170 180 190 200 250 260 270 280 290 pF1KB7 VPPPDDLTQ-PSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAG----- ::::.:: : ::. : : :. . .:. . . . . . :: . :: CCDS32 VPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEI 210 220 230 240 250 260 300 310 320 330 340 pF1KB7 SISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY ..:: . .: . : :.:: : CCDS32 TVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSG 270 280 290 300 310 320 >>CCDS236.1 E2F2 gene_id:1870|Hs108|chr1 (437 aa) initn: 271 init1: 168 opt: 518 Z-score: 358.2 bits: 75.1 E(32554): 1.2e-13 Smith-Waterman score: 574; 37.0% identity (61.2% similar) in 343 aa overlap (16-340:93-427) 10 20 30 40 pF1KB7 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPP--PPPQLGG : :. : :... . : :. CCDS23 LDATPHGPEGQVVRCLPAGRLPAKRKLDLEGIGRPVVPEFPTPKGKCIRVDGLPSPKTPK 70 80 90 100 110 120 50 60 70 80 90 100 pF1KB7 AGGGSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDL . : ..:.. :::::: ::. ::.:..::::::. ::..: : :::::::::::::::.: CCDS23 SPGEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDV-QKRRIYDITNVLEGIQL 130 140 150 160 170 180 110 120 130 140 150 160 pF1KB7 IEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMD :.::.::.::: : : . . . . : :...: :. ::: . :.:.. . CCDS23 IRKKAKNNIQWVGRGMFEDPTRP-GKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTE 190 200 210 220 230 240 170 180 190 200 210 220 pF1KB7 DSINNRFSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHS :. :.:..:::..:: . :. .:..:..:: :.:::: . . . :: ::: . CCDS23 DKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVP-----DRTEDNLQIYLKSTQ 250 260 270 280 290 230 240 250 260 270 pF1KB7 GPIHVLLINKE-SSSSKPVVFPVP------PPDDLTQPSSQSLTP--VTPQKSSM-ATQN :::.: : .: . ..: :.: : : .:::: : : . : ::. : CCDS23 GPIEVYLCPEEVQEPDSPSEEPLPSTSTLCPSPDSAQPSS-STDPSIMEPTASSVPAPAP 300 310 320 330 340 350 280 290 300 310 320 pF1KB7 LPEQHVSERSQALQQTSATDISSAGSISGDIIDELMSSDVF---PLLRLSPT-PADDYNF :.: : . ... . . . . :...: . ::. .::. ::: . CCDS23 TPQQAPPPPSLVPLEATDSLLELPHPLLQQTEDQFLSPTLACSSPLISFSPSLDQDDYLW 360 370 380 390 400 410 330 340 pF1KB7 NLDDNEGVCDLFDVQILNY .:. .::. :::: CCDS23 GLEAGEGISDLFDSYDLGDLLIN 420 430 >>CCDS4545.1 E2F3 gene_id:1871|Hs108|chr6 (465 aa) initn: 358 init1: 167 opt: 481 Z-score: 333.5 bits: 70.6 E(32554): 3e-12 Smith-Waterman score: 534; 34.2% identity (64.3% similar) in 339 aa overlap (8-340:147-449) 10 20 30 pF1KB7 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPP :.: ..: :.:.. :. :.. : CCDS45 PALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKT----PKS 120 130 140 150 160 170 40 50 60 70 80 90 pF1KB7 PPQLGGAGGGSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNV : . ..:.. :::::: ::..::... ::::::. ::..: : ::::::::::: CCDS45 PSE-------KTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKV-QKRRIYDITNV 180 190 200 210 220 100 110 120 130 140 150 pF1KB7 LEGIDLIEKKSKNSIQWKGVGAGCNTKE---VIDRLRYLKAEIEDLELKERELDQQKLWL :::: ::.:::::..:: ::. .: .. . . :. :. .: .:..::. CCDS45 LEGIHLIKKKSKNNVQW----MGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSC 230 240 250 260 270 280 160 170 180 190 200 210 pF1KB7 QQSIKNVMDDSINNRFSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKK ..: . .:: :.:..:::..:: . .. .:.....:: :.:::: .. .. CCDS45 TLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVP------DSIES 290 300 310 320 330 220 230 240 250 260 270 pF1KB7 YQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPD-DLTQPSSQSLTPVTPQKSSMATQN ::.: : .:::.: : .:. . .:. . .. .:.:..:. .. .:. ... CCDS45 LQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSM 340 350 360 370 380 390 280 290 300 310 320 330 pF1KB7 LPEQHVSERSQALQQTSATDISSAGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDD . .. .. :::: .: : .. : ... : :::. .:: ..: . CCDS45 GNLSPLASPANLLQQTE-DQIPS--NLEGPFVNLLP-----PLLQ------EDYLLSLGE 400 410 420 430 440 340 pF1KB7 NEGVCDLFDVQILNY .::. :::: CCDS45 EEGISDLFDAYDLEKLPLVEDFMCS 450 460 >>CCDS58999.1 E2F3 gene_id:1871|Hs108|chr6 (334 aa) initn: 327 init1: 167 opt: 470 Z-score: 328.2 bits: 69.1 E(32554): 5.9e-12 Smith-Waterman score: 514; 33.6% identity (63.1% similar) in 339 aa overlap (8-340:22-318) 10 20 30 40 pF1KB7 MAAAEPASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQLGGAGG :.: ..: :.:.. :. :. . CCDS58 MPLQQQAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKKK--------------- 10 20 30 40 50 60 70 80 90 100 pF1KB7 GSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEK .:.. :::::: ::..::... ::::::. ::..: : ::::::::::::::: ::.: CCDS58 --TRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKV-QKRRIYDITNVLEGIHLIKK 50 60 70 80 90 100 110 120 130 140 150 160 pF1KB7 KSKNSIQWKGVGAGCNTKE---VIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMD ::::..:: ::. .: .. . . :. :. .: .:..::. ..: . . CCDS58 KSKNNVQW----MGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTE 110 120 130 140 150 170 180 190 200 210 220 pF1KB7 DSINNRFSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHS :: :.:..:::..:: . .. .:.....:: :.:::: .. .. ::.: : . CCDS58 DSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVP------DSIESLQIHLASTQ 160 170 180 190 200 210 230 240 250 260 270 280 pF1KB7 GPIHVLLINKESSSSKPVVFPVPPPD-DLTQPSSQSLTPVTPQKSSMATQNLPEQHVSER :::.: : .:. . .:. . .. .:.:..:. .. .:. ... . .. CCDS58 GPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASP 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB7 SQALQQTSATDISSAGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFD .. :::: .: : .. : ... : :::. .:: ..: ..::. :::: CCDS58 ANLLQQTE-DQIPS--NLEGPFVNLLP-----PLLQ------EDYLLSLGEEEGISDLFD 280 290 300 310 pF1KB7 VQILNY CCDS58 AYDLEKLPLVEDFMCS 320 330 346 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:04:34 2016 done: Sun Nov 6 21:04:35 2016 Total Scan time: 3.390 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]