FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0291, 407 aa
  1>>>pF1KE0291 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3398+/-0.000808; mu= 14.9857+/- 0.050
 mean_var=142.3930+/-27.613, 0's: 0 Z-trim(112.9): 34  B-trim: 36 in 1/52
 Lambda= 0.107481
 statistics sampled from 13613 (13638) to 13613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.419), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS33562.1 IGSF5 gene_id:150084|Hs108|chr21       ( 407) 2833 450.5 1.3e-126


>>CCDS33562.1 IGSF5 gene_id:150084|Hs108|chr21            (407 aa)
 initn: 2833 init1: 2833 opt: 2833  Z-score: 2386.4  bits: 450.5 E(32554): 1.3e-126
Smith-Waterman score: 2833; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
              370       380       390       400       




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:31:27 2016 done: Thu Nov  3 17:31:27 2016
 Total Scan time:  3.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]