FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1616, 127 aa
  1>>>pF1KE1616 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1463+/-0.000694; mu= 11.3172+/- 0.042
 mean_var=57.8384+/-11.260, 0's: 0 Z-trim(108.8): 33  B-trim: 0 in 0/51
 Lambda= 0.168642
 statistics sampled from 10414 (10436) to 10414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.321), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS3944.1 CCL28 gene_id:56477|Hs108|chr5          ( 127)  881 222.0 7.9e-59
CCDS78006.1 CCL28 gene_id:56477|Hs108|chr5         (  80)  580 148.7 5.9e-37


>>CCDS3944.1 CCL28 gene_id:56477|Hs108|chr5               (127 aa)
 initn: 881 init1: 881 opt: 881  Z-score: 1169.6  bits: 222.0 E(32554): 7.9e-59
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
               70        80        90       100       110       120

              
pF1KE1 YGHKTPY
       :::::::
CCDS39 YGHKTPY
              

>>CCDS78006.1 CCL28 gene_id:56477|Hs108|chr5              (80 aa)
 initn: 580 init1: 580 opt: 580  Z-score: 777.0  bits: 148.7 E(32554): 5.9e-37
Smith-Waterman score: 580; 100.0% identity (100.0% similar) in 80 aa overlap (48-127:1-80)

        20        30        40        50        60        70       
pF1KE1 HASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRRRICVSPH
                                     ::::::::::::::::::::::::::::::
CCDS78                               MCRIQRADGDCDLAAVILHVKRRRICVSPH
                                             10        20        30

        80        90       100       110       120       
pF1KE1 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY
               40        50        60        70        80




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:36:29 2016 done: Sun Nov  6 21:36:29 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]