(Circular) (Six-base) MAPSORT of: pFN21AE0171.seq Check: 8453 from: 1 to: 5371 pFN21AE0171 5371 bp With 182 enzymes: SgfI * October 20, 2009 10:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3181 278 Size: 53 83 186 936 1645 2468 Fragments arranged by size: 2468 1645 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2714 1937 Size: 777 4594 Acc65I G'GTAC_C Cuts at: 2692 2692 Size: 5371 AclI AA'CG_TT Cuts at: 1563 3498 3871 1563 Size: 1935 373 3063 Fragments arranged by size: 3063 1935 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2240 2288 2561 3434 4818 5086 1632 Size: 608 48 273 873 1384 268 1917 Fragments arranged by size: 1917 1384 873 608 273 268 48 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5174 AflIII A'CryG_T Cuts at: 1203 4270 5247 1203 Size: 3067 977 1327 Fragments arranged by size: 3067 1327 977 AgeI A'CCGG_T Cuts at: 4202 4202 Size: 5371 AhdI GACnn_n'nnGTC Cuts at: 4100 4100 Size: 5371 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5371 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5371 AlwNI CAG_nnn'CTG Cuts at: 3114 4686 3114 Size: 1572 3799 ApaLI G'TGCA_C Cuts at: 3428 4584 3428 Size: 1156 4215 ApoI r'AATT_y Cuts at: 1493 2680 2906 3058 5167 1493 Size: 1187 226 152 2109 1697 Fragments arranged by size: 2109 1697 1187 226 152 AseI AT'TA_AT Cuts at: 160 1032 3925 160 Size: 872 2893 1606 Fragments arranged by size: 2893 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5371 AvaI C'yCGr_G Cuts at: 1870 1943 2696 1870 Size: 73 753 4545 Fragments arranged by size: 4545 753 73 BamHI G'GATC_C Cuts at: 2506 2701 3068 2506 Size: 195 367 4809 Fragments arranged by size: 4809 367 195 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2027 2111 2692 4147 618 Size: 325 217 627 240 84 581 1455 1842 Fragments arranged by size: 1842 1455 627 581 325 240 217 84 BanII G_rGCy'C Cuts at: 1391 2069 2690 1391 Size: 678 621 4072 Fragments arranged by size: 4072 678 621 BbeI G_GCGC'C Cuts at: 2115 2115 Size: 5371 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4400 BbvCI CC'TCA_GC Cuts at: 2318 2318 Size: 5371 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3562 3596 1903 Size: 34 1625 34 3678 Fragments arranged by size: 3678 1625 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3263 4473 3263 Size: 1210 4161 BclI T'GATC_A Cuts at: 1548 1548 Size: 5371 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3982 136 Size: 107 122 71 631 605 2310 1525 Fragments arranged by size: 2310 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5366 5366 Size: 5371 BlpI GC'TnA_GC Cuts at: 2788 2788 Size: 5371 Bme1580I G_kGCm'C Cuts at: 1790 3432 4588 1790 Size: 1642 1156 2573 Fragments arranged by size: 2573 1642 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5371 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2641 3102 4060 Size: 416 53 83 399 24 1224 461 958 Cuts at: 4060 442 Size: 1753 Fragments arranged by size: 1753 1224 958 461 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5371 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2053 4031 1239 Size: 814 1978 2579 Fragments arranged by size: 2579 1978 814 Bpu10I CC'TnA_GC Cuts at: 2318 2437 2318 Size: 119 5252 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3496 4361 4659 3496 Size: 865 298 4208 Fragments arranged by size: 4208 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4034 882 Size: 617 2535 2219 Fragments arranged by size: 2535 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2179 3162 493 Size: 711 975 983 2702 Fragments arranged by size: 2702 983 975 711 BsaBI GATnn'nnATC Cuts at: 5365 5365 Size: 5371 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2112 3178 3560 4195 Size: 53 83 186 936 579 1066 382 635 Cuts at: 4195 275 Size: 1451 Fragments arranged by size: 1451 1066 936 635 579 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2047 3804 4202 4476 4623 5034 2047 Size: 1757 398 274 147 411 2384 Fragments arranged by size: 2384 1757 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5146 Fragments arranged by size: 5146 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2216 1186 Size: 1030 4341 BseYI C'CCAG_C Cuts at: 2542 4574 5070 2542 Size: 2032 496 2843 Fragments arranged by size: 2843 2032 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2135 2247 1163 Size: 573 399 112 4287 Fragments arranged by size: 4287 573 399 112 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2821 3582 4610 1540 Size: 275 186 820 761 1028 2301 Fragments arranged by size: 2301 1028 820 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2565 3432 3517 4588 2565 Size: 867 85 1071 3348 Fragments arranged by size: 3348 1071 867 85 BsmI GAATG_Cn' Cuts at: 2882 2975 2882 Size: 93 5278 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2069 2565 2690 3432 3517 4588 1391 Size: 399 279 496 125 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 496 399 279 125 85 BspEI T'CCGG_A Cuts at: 5034 5034 Size: 5371 BspHI T'CATG_A Cuts at: 3260 4990 3260 Size: 1730 3641 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2103 2726 844 Size: 1259 623 3489 Fragments arranged by size: 3489 1259 623 BsrBI CCG'CTC Cuts at: 1394 1823 3258 1394 Size: 429 1435 3507 Fragments arranged by size: 3507 1435 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3866 4040 65 Size: 1183 2618 174 1396 Fragments arranged by size: 2618 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4015 4202 1700 Size: 110 2205 187 2869 Fragments arranged by size: 2869 2205 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5371 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5371 BssSI C'ACGA_G Cuts at: 3431 4443 3431 Size: 1012 4359 BstAPI GCAn_nnn'nTGC Cuts at: 794 2143 794 Size: 1349 4022 BstBI TT'CG_AA Cuts at: 4175 4175 Size: 5371 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5371 BstYI r'GATC_y Cuts at: 1972 2506 2701 3068 3453 3470 4922 5008 5020 Size: 534 195 367 385 17 1452 86 12 Cuts at: 5020 5366 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 534 385 367 346 195 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4819 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4632 Fragments arranged by size: 4632 683 56 BtsI GCAGTG_nn' Cuts at: 2025 2510 2537 2887 3681 3701 2025 Size: 485 27 350 794 20 3695 Fragments arranged by size: 3695 794 485 350 27 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5371 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2263 2298 529 Size: 35 1699 35 3602 Fragments arranged by size: 3602 1699 35 35 DraI TTT'AAA Cuts at: 2675 2675 Size: 5371 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4378 809 Size: 507 3062 1802 Fragments arranged by size: 3062 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2223 2818 3707 Size: 54 1425 50 275 18 393 595 889 Cuts at: 3707 5336 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 595 393 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2818 1537 Size: 275 1006 4090 Fragments arranged by size: 4090 1006 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2259 3301 1353 Size: 906 1042 3423 Fragments arranged by size: 3423 1042 906 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3958 4332 4478 387 Size: 1064 138 2369 374 146 1280 Fragments arranged by size: 2369 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2053 2240 2288 2561 3434 4031 4818 Size: 393 421 187 48 273 873 597 787 Cuts at: 4818 5086 1239 Size: 268 1524 Fragments arranged by size: 1524 873 787 597 421 393 273 268 187 48 EcoRI G'AATT_C Cuts at: 2680 3058 2680 Size: 378 4993 FspI TGC'GCA Cuts at: 3877 3877 Size: 5371 HaeII r_GCGC'y Cuts at: 1678 2115 4518 1678 Size: 437 2403 2531 Fragments arranged by size: 2531 2403 437 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4012 4044 4086 4118 1373 Size: 32 135 32 2440 32 42 32 2626 Fragments arranged by size: 2626 2440 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2715 2961 669 Size: 988 281 777 246 3079 Fragments arranged by size: 3079 988 777 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5371 HpaI GTT'AAC Cuts at: 2961 2961 Size: 5371 KasI G'GCGC_C Cuts at: 2111 2111 Size: 5371 KpnI G_GTAC'C Cuts at: 2696 2696 Size: 5371 MfeI C'AATT_G Cuts at: 2970 2970 Size: 5371 MluI A'CGCG_T Cuts at: 5247 5247 Size: 5371 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4485 4669 1305 Size: 3180 184 2007 Fragments arranged by size: 3180 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2225 10 Size: 54 1425 343 393 3156 Fragments arranged by size: 3156 1425 393 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3329 3688 3847 518 Size: 648 2163 359 159 2042 Fragments arranged by size: 2163 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2041 2149 2787 3464 4612 4857 1606 Size: 435 108 638 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 638 435 245 108 NarI GG'CG_CC Cuts at: 2112 2112 Size: 5371 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4819 NdeI CA'TA_TG Cuts at: 387 387 Size: 5371 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5371 NotI GC'GGCC_GC Cuts at: 2818 2818 Size: 5371 NspI r_CATG'y Cuts at: 1132 1229 2729 4274 1132 Size: 97 1500 1545 2229 Fragments arranged by size: 2229 1545 1500 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5371 PciI A'CATG_T Cuts at: 4270 4270 Size: 5371 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5371 PmeI GTTT'AAAC Cuts at: 2675 2675 Size: 5371 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3440 3472 4953 4985 3440 Size: 32 1481 32 3826 Fragments arranged by size: 3826 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5371 PsiI TTA'TAA Cuts at: 2941 2941 Size: 5371 PstI C_TGCA'G Cuts at: 830 2723 830 Size: 1893 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5371 PvuII CAG'CTG Cuts at: 2041 2149 2041 Size: 108 5263 SalI G'TCGA_C Cuts at: 1936 2713 1936 Size: 777 4594 SapI GCTCTTCn'nnn_ Cuts at: 2259 2259 Size: 5371 SbfI CC_TGCA'GG Cuts at: 2723 2723 Size: 5371 ScaI AGT'ACT Cuts at: 3619 5331 3619 Size: 1712 3659 SfcI C'TryA_G Cuts at: 826 1045 2719 3854 4535 4726 826 Size: 219 1674 1135 681 191 1471 Fragments arranged by size: 1674 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2113 2113 Size: 5371 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5371 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5371 SmaI CCC'GGG Cuts at: 1872 2698 1872 Size: 826 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3475 4376 4638 820 Size: 197 926 1532 901 262 1553 Fragments arranged by size: 1553 1532 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3162 493 Size: 2669 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5371 SphI G_CATG'C Cuts at: 1132 2729 1132 Size: 1597 3774 SspI AAT'ATT Cuts at: 5 52 3295 5 Size: 47 3243 2081 Fragments arranged by size: 3243 2081 47 StuI AGG'CCT Cuts at: 1517 2529 2596 1517 Size: 1012 67 4292 Fragments arranged by size: 4292 1012 67 StyI C'CwwG_G Cuts at: 513 1065 2226 2431 2810 513 Size: 552 1161 205 379 3074 Fragments arranged by size: 3074 1161 552 379 205 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3398 3415 3568 3753 4198 325 Size: 1255 1818 17 153 185 445 1498 Fragments arranged by size: 1818 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3617 5329 96 Size: 274 80 33 51 1443 1640 1712 138 Fragments arranged by size: 1712 1640 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5331 5363 5331 Size: 32 5339 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5371 XbaI T'CTAG_A Cuts at: 2707 2707 Size: 5371 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2038 2038 Size: 5371 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5371 XmaI C'CCGG_G Cuts at: 1870 2696 1870 Size: 826 4545 XmnI GAAnn'nnTTC Cuts at: 3500 3500 Size: 5371 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3179 276 Size: 53 83 186 936 1645 2468 Fragments arranged by size: 2468 1645 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SexAI SfiI SrfI SwaI