Result of FASTA (omim) for pFN21AE1129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1129, 166 aa
  1>>>pF1KE1129 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3463+/-0.000344; mu= 12.4421+/- 0.021
 mean_var=89.7151+/-17.338, 0's: 0 Z-trim(117.3): 75  B-trim: 170 in 2/50
 Lambda= 0.135407
 statistics sampled from 29083 (29165) to 29083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.342), width:  16
 Scan time:  5.520

The best scores are:                                      opt bits E(85289)
NP_001295087 (OMIM: 190170) protransforming growth ( 166) 1147 233.4 1.3e-61
NP_001295088 (OMIM: 190170) protransforming growth ( 165) 1130 230.1 1.3e-60
NP_003227 (OMIM: 190170) protransforming growth fa ( 160) 1026 209.8 1.6e-54
NP_001093161 (OMIM: 190170) protransforming growth ( 159) 1009 206.5 1.6e-53
XP_011530513 (OMIM: 600345) PREDICTED: probetacell ( 178)  248 57.8 9.8e-09
NP_001720 (OMIM: 600345) probetacellulin isoform 1 ( 178)  248 57.8 9.8e-09
NP_003683 (OMIM: 603421) tomoregulin-1 precursor [ ( 380)  211 50.9 2.5e-06
XP_011509192 (OMIM: 605734) PREDICTED: tomoregulin ( 365)  208 50.3 3.7e-06
NP_057276 (OMIM: 605734) tomoregulin-2 isoform 1 p ( 374)  208 50.3 3.8e-06
XP_016859228 (OMIM: 605734) PREDICTED: tomoregulin ( 337)  203 49.3 6.9e-06
NP_001292063 (OMIM: 605734) tomoregulin-2 isoform  ( 346)  203 49.3   7e-06
XP_016863341 (OMIM: 131530,611718) PREDICTED: pro- (1010)  188 46.8 0.00012
XP_016863340 (OMIM: 131530,611718) PREDICTED: pro- (1060)  188 46.8 0.00012
NP_001423 (OMIM: 602061) proepiregulin preproprote ( 169)  178 44.1 0.00012
XP_016863339 (OMIM: 131530,611718) PREDICTED: pro- (1141)  188 46.9 0.00013
XP_016863338 (OMIM: 131530,611718) PREDICTED: pro- (1142)  188 46.9 0.00013
NP_001171602 (OMIM: 131530,611718) pro-epidermal g (1165)  188 46.9 0.00013
XP_011530009 (OMIM: 131530,611718) PREDICTED: pro- (1178)  188 46.9 0.00013
XP_016863337 (OMIM: 131530,611718) PREDICTED: pro- (1181)  188 46.9 0.00013
NP_001954 (OMIM: 131530,611718) pro-epidermal grow (1207)  188 46.9 0.00013
XP_016863335 (OMIM: 131530,611718) PREDICTED: pro- (1215)  188 46.9 0.00013
XP_005262853 (OMIM: 131530,611718) PREDICTED: pro- (1215)  188 46.9 0.00013
XP_016863334 (OMIM: 131530,611718) PREDICTED: pro- (1223)  188 46.9 0.00013
NP_001171601 (OMIM: 131530,611718) pro-epidermal g (1166)  184 46.1 0.00022
XP_016863336 (OMIM: 131530,611718) PREDICTED: pro- (1182)  184 46.1 0.00022
NP_001936 (OMIM: 126150) proheparin-binding EGF-li ( 208)  171 42.9 0.00037
NP_001648 (OMIM: 104640) amphiregulin preproprotei ( 252)  148 38.4  0.0096


>>NP_001295087 (OMIM: 190170) protransforming growth fac  (166 aa)
 initn: 1147 init1: 1147 opt: 1147  Z-score: 1227.3  bits: 233.4 E(85289): 1.3e-61
Smith-Waterman score: 1147; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
               70        80        90       100       110       120

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
              130       140       150       160      

>>NP_001295088 (OMIM: 190170) protransforming growth fac  (165 aa)
 initn: 910 init1: 910 opt: 1130  Z-score: 1209.4  bits: 230.1 E(85289): 1.3e-60
Smith-Waterman score: 1130; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-165)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_001 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
      60        70        80        90       100       110         

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
     120       130       140       150       160     

>>NP_003227 (OMIM: 190170) protransforming growth factor  (160 aa)
 initn: 1025 init1: 1025 opt: 1026  Z-score: 1099.8  bits: 209.8 E(85289): 1.6e-54
Smith-Waterman score: 1026; 94.4% identity (95.0% similar) in 160 aa overlap (7-166:6-160)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
             : : ::.      :::::::::::::::::::::::::::::::::::::::::
NP_003  MVPSAGQLALFAL-----GIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
                10             20        30        40        50    

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
           60        70        80        90       100       110    

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
          120       130       140       150       160

>>NP_001093161 (OMIM: 190170) protransforming growth fac  (159 aa)
 initn: 910 init1: 910 opt: 1009  Z-score: 1081.9  bits: 206.5 E(85289): 1.6e-53
Smith-Waterman score: 1009; 93.8% identity (94.4% similar) in 160 aa overlap (7-166:6-159)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
             : : ::.      :::::::::::::::::: ::::::::::::::::::::::
NP_001  MVPSAGQLALFAL-----GIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF
                10             20        30         40        50   

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
            60        70        80        90       100       110   

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
           120       130       140       150         

>>XP_011530513 (OMIM: 600345) PREDICTED: probetacellulin  (178 aa)
 initn: 234 init1: 221 opt: 248  Z-score: 277.8  bits: 57.8 E(85289): 9.8e-09
Smith-Waterman score: 263; 34.0% identity (62.5% similar) in 144 aa overlap (5-134:9-147)

                   10        20        30              40          
pF1KE1     MFKIGRGALDLFSELLSFGGIVLAACQALENST-SP-----LSADPPVAAAVVS--
               : ..: :.  : ..: ..:    :  ::: ::     : .::    :...  
XP_011 MDRAARCSGASSLPLLLAL-ALGLVILHCVVADGNSTRSPETNGLLCGDPEENCAATTTQ
               10         20        30        40        50         

            50        60        70        80        90       100   
pF1KE1 -----HFNDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKK
            ::. :: .. ..:..: :::.: :. :.:::  ::.:::::..::.  . ... .
XP_011 SKRKGHFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLF-YLRGDRGQ
      60        70        80        90       100       110         

           110       120       130        140       150       160  
pF1KE1 QAITALVVVSIVALAVLIITCVLIHCCQ-VRKHCEWCRALICRHEKPSALLKGRTACCHS
         .  :..: .: . ..: .:.   ::. .::                            
XP_011 ILVICLIAVMVVFIILVIGVCT---CCHPLRKRRKRKKKEEEMETLGKDITPINEDIEET
      120       130       140          150       160       170     

           
pF1KE1 ETVV
           
XP_011 NIA 
           

>>NP_001720 (OMIM: 600345) probetacellulin isoform 1 pre  (178 aa)
 initn: 234 init1: 221 opt: 248  Z-score: 277.8  bits: 57.8 E(85289): 9.8e-09
Smith-Waterman score: 263; 34.0% identity (62.5% similar) in 144 aa overlap (5-134:9-147)

                   10        20        30              40          
pF1KE1     MFKIGRGALDLFSELLSFGGIVLAACQALENST-SP-----LSADPPVAAAVVS--
               : ..: :.  : ..: ..:    :  ::: ::     : .::    :...  
NP_001 MDRAARCSGASSLPLLLAL-ALGLVILHCVVADGNSTRSPETNGLLCGDPEENCAATTTQ
               10         20        30        40        50         

            50        60        70        80        90       100   
pF1KE1 -----HFNDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKK
            ::. :: .. ..:..: :::.: :. :.:::  ::.:::::..::.  . ... .
NP_001 SKRKGHFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLF-YLRGDRGQ
      60        70        80        90       100       110         

           110       120       130        140       150       160  
pF1KE1 QAITALVVVSIVALAVLIITCVLIHCCQ-VRKHCEWCRALICRHEKPSALLKGRTACCHS
         .  :..: .: . ..: .:.   ::. .::                            
NP_001 ILVICLIAVMVVFIILVIGVCT---CCHPLRKRRKRKKKEEEMETLGKDITPINEDIEET
      120       130       140          150       160       170     

           
pF1KE1 ETVV
           
NP_001 NIA 
           

>>NP_003683 (OMIM: 603421) tomoregulin-1 precursor [Homo  (380 aa)
 initn: 206 init1: 188 opt: 211  Z-score: 234.5  bits: 50.9 E(85289): 2.5e-06
Smith-Waterman score: 211; 31.0% identity (66.7% similar) in 87 aa overlap (47-129:269-355)

         20        30        40        50        60        70      
pF1KE1 SFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQFCFHGTCRFLVQEDKPA
                                     ...   ::.. . .:.:: :.:. . .: .
NP_003 DDTSLLGKKDDGLQYRPDVKDASDQREDVYIGNHMPCPENLNGYCIHGKCEFIYSTQKAS
      240       250       260       270       280       290        

         80        90         100       110       120         130  
pF1KE1 CVCHSGYVGARCEHAD--LLAVVAASQKKQAITALVVVSIVALAVL--IITCVLIHCCQV
       : :.:::.: .::..:  .: :: . ::   .   .... : .:..  :. :.  .:   
NP_003 CRCESGYTGQHCEKTDFSILYVVPSRQKLTHVLIAAIIGAVQIAIIVAIVMCITRKCPKN
      300       310       320       330       340       350        

            140       150       160      
pF1KE1 RKHCEWCRALICRHEKPSALLKGRTACCHSETVV
                                         
NP_003 NRGRRQKQNLGHFTSDTSSRMV            
      360       370       380            

>>XP_011509192 (OMIM: 605734) PREDICTED: tomoregulin-2 i  (365 aa)
 initn: 193 init1: 157 opt: 208  Z-score: 231.5  bits: 50.3 E(85289): 3.7e-06
Smith-Waterman score: 208; 31.1% identity (63.3% similar) in 90 aa overlap (49-136:252-336)

       20        30        40        50        60        70        
pF1KE1 GGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQFCFHGTCRFLVQEDKPACV
                                     :   ::. .. ::.:: :.  .. ..:.: 
XP_011 TTTTTKSEDGHYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCR
             230       240       250       260       270       280 

       80        90         100       110       120       130      
pF1KE1 CHSGYVGARCEHAD--LLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHC
       : .::.: .::. :  .: :: .  . : .   .:.. . .::.   ::.. :  . ..:
XP_011 CDAGYTGQHCEKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVI---CVVVLC--ITRKC
             290       300       310       320          330        

        140       150       160      
pF1KE1 EWCRALICRHEKPSALLKGRTACCHSETVV
                                     
XP_011 PRSNRIHRQKQNTGHYSSDNTTRASTRLI 
        340       350       360      

>>NP_057276 (OMIM: 605734) tomoregulin-2 isoform 1 precu  (374 aa)
 initn: 193 init1: 157 opt: 208  Z-score: 231.4  bits: 50.3 E(85289): 3.8e-06
Smith-Waterman score: 208; 31.1% identity (63.3% similar) in 90 aa overlap (49-136:261-345)

       20        30        40        50        60        70        
pF1KE1 GGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQFCFHGTCRFLVQEDKPACV
                                     :   ::. .. ::.:: :.  .. ..:.: 
NP_057 TTTTTKSEDGHYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCR
              240       250       260       270       280       290

       80        90         100       110       120       130      
pF1KE1 CHSGYVGARCEHAD--LLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHC
       : .::.: .::. :  .: :: .  . : .   .:.. . .::.   ::.. :  . ..:
NP_057 CDAGYTGQHCEKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVI---CVVVLC--ITRKC
              300       310       320       330          340       

        140       150       160      
pF1KE1 EWCRALICRHEKPSALLKGRTACCHSETVV
                                     
NP_057 PRSNRIHRQKQNTGHYSSDNTTRASTRLI 
         350       360       370     

>>XP_016859228 (OMIM: 605734) PREDICTED: tomoregulin-2 i  (337 aa)
 initn: 225 init1: 157 opt: 203  Z-score: 226.7  bits: 49.3 E(85289): 6.9e-06
Smith-Waterman score: 203; 32.5% identity (63.9% similar) in 83 aa overlap (49-129:252-331)

       20        30        40        50        60        70        
pF1KE1 GGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQFCFHGTCRFLVQEDKPACV
                                     :   ::. .. ::.:: :.  .. ..:.: 
XP_016 TTTTTKSEDGHYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCR
             230       240       250       260       270       280 

       80        90         100       110       120       130      
pF1KE1 CHSGYVGARCEHAD--LLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHC
       : .::.: .::. :  .: :: .  . : .   .:.. . .::.   ::.. :       
XP_016 CDAGYTGQHCEKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVI---CVVVLCITRAKL 
             290       300       310       320          330        

        140       150       160      
pF1KE1 EWCRALICRHEKPSALLKGRTACCHSETVV




166 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:59:53 2016 done: Sun Nov  6 21:59:54 2016
 Total Scan time:  5.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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