FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1129, 166 aa 1>>>pF1KE1129 166 - 166 aa - 166 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7903+/-0.000759; mu= 15.7781+/- 0.046 mean_var=88.0695+/-16.545, 0's: 0 Z-trim(110.8): 38 B-trim: 6 in 1/51 Lambda= 0.136666 statistics sampled from 11870 (11904) to 11870 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.366), width: 16 Scan time: 1.880 The best scores are: opt bits E(32554) CCDS77420.1 TGFA gene_id:7039|Hs108|chr2 ( 166) 1147 235.2 1.4e-62 CCDS77419.1 TGFA gene_id:7039|Hs108|chr2 ( 165) 1130 231.9 1.4e-61 CCDS1905.1 TGFA gene_id:7039|Hs108|chr2 ( 160) 1026 211.4 2e-55 CCDS46316.1 TGFA gene_id:7039|Hs108|chr2 ( 159) 1009 208.0 2.1e-54 >>CCDS77420.1 TGFA gene_id:7039|Hs108|chr2 (166 aa) initn: 1147 init1: 1147 opt: 1147 Z-score: 1237.2 bits: 235.2 E(32554): 1.4e-62 Smith-Waterman score: 1147; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL 70 80 90 100 110 120 130 140 150 160 pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV :::::::::::::::::::::::::::::::::::::::::::::: CCDS77 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 130 140 150 160 >>CCDS77419.1 TGFA gene_id:7039|Hs108|chr2 (165 aa) initn: 910 init1: 910 opt: 1130 Z-score: 1219.1 bits: 231.9 E(32554): 1.4e-61 Smith-Waterman score: 1130; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-165) 10 20 30 40 50 60 pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: CCDS77 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL 60 70 80 90 100 110 130 140 150 160 pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV :::::::::::::::::::::::::::::::::::::::::::::: CCDS77 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 120 130 140 150 160 >>CCDS1905.1 TGFA gene_id:7039|Hs108|chr2 (160 aa) initn: 1025 init1: 1025 opt: 1026 Z-score: 1108.4 bits: 211.4 E(32554): 2e-55 Smith-Waterman score: 1026; 94.4% identity (95.0% similar) in 160 aa overlap (7-166:6-160) 10 20 30 40 50 60 pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF : : ::. ::::::::::::::::::::::::::::::::::::::::: CCDS19 MVPSAGQLALFAL-----GIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL 60 70 80 90 100 110 130 140 150 160 pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV :::::::::::::::::::::::::::::::::::::::::::::: CCDS19 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 120 130 140 150 160 >>CCDS46316.1 TGFA gene_id:7039|Hs108|chr2 (159 aa) initn: 910 init1: 910 opt: 1009 Z-score: 1090.3 bits: 208.0 E(32554): 2.1e-54 Smith-Waterman score: 1009; 93.8% identity (94.4% similar) in 160 aa overlap (7-166:6-159) 10 20 30 40 50 60 pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF : : ::. :::::::::::::::::: :::::::::::::::::::::: CCDS46 MVPSAGQLALFAL-----GIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL 60 70 80 90 100 110 130 140 150 160 pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV :::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 120 130 140 150 166 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:59:52 2016 done: Sun Nov 6 21:59:53 2016 Total Scan time: 1.880 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]