(Circular) (Six-base) MAPSORT of: pFN21AB6361.seq Check: 5914 from: 1 to: 5212 pFN21AB6361 5212 bp With 182 enzymes: SgfI * August 16, 2010 14:44 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3022 278 Size: 53 83 186 936 1486 2468 Fragments arranged by size: 2468 1486 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2555 1937 Size: 618 4594 Acc65I G'GTAC_C Cuts at: 2533 2533 Size: 5212 AclI AA'CG_TT Cuts at: 1563 3339 3712 1563 Size: 1776 373 3063 Fragments arranged by size: 3063 1776 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3275 4659 4927 1632 Size: 1643 1384 268 1917 Fragments arranged by size: 1917 1643 1384 268 AfeI AGC'GCT Cuts at: 2368 2368 Size: 5212 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5015 AflIII A'CryG_T Cuts at: 1203 4111 5088 1203 Size: 2908 977 1327 Fragments arranged by size: 2908 1327 977 AgeI A'CCGG_T Cuts at: 4043 4043 Size: 5212 AhdI GACnn_n'nnGTC Cuts at: 2040 3941 2040 Size: 1901 3311 AleI CACnn'nnGTG Cuts at: 1166 2324 1166 Size: 1158 4054 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5212 AlwNI CAG_nnn'CTG Cuts at: 2955 4527 2955 Size: 1572 3640 ApaLI G'TGCA_C Cuts at: 3269 4425 3269 Size: 1156 4056 ApoI r'AATT_y Cuts at: 1493 2521 2747 2899 5008 1493 Size: 1028 226 152 2109 1697 Fragments arranged by size: 2109 1697 1028 226 152 AseI AT'TA_AT Cuts at: 160 1032 3766 160 Size: 872 2734 1606 Fragments arranged by size: 2734 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5212 AvaI C'yCGr_G Cuts at: 1870 1943 2152 2537 1870 Size: 73 209 385 4545 Fragments arranged by size: 4545 385 209 73 BamHI G'GATC_C Cuts at: 2542 2909 2542 Size: 367 4845 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2228 2533 3988 618 Size: 325 217 627 441 305 1455 1842 Fragments arranged by size: 1842 1455 627 441 325 305 217 BanII G_rGCy'C Cuts at: 1391 2097 2159 2531 1391 Size: 706 62 372 4072 Fragments arranged by size: 4072 706 372 62 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2490 928 Size: 971 591 3650 Fragments arranged by size: 3650 971 591 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3403 3437 1903 Size: 34 1466 34 3678 Fragments arranged by size: 3678 1466 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2310 3104 4314 2310 Size: 794 1210 3208 Fragments arranged by size: 3208 1210 794 BclI T'GATC_A Cuts at: 1548 1548 Size: 5212 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2444 3823 136 Size: 107 122 71 631 605 772 1379 1525 Fragments arranged by size: 1525 1379 772 631 605 122 107 71 BglII A'GATC_T Cuts at: 5207 5207 Size: 5212 BlpI GC'TnA_GC Cuts at: 2363 2629 2363 Size: 266 4946 Bme1580I G_kGCm'C Cuts at: 1790 3273 4429 1790 Size: 1483 1156 2573 Fragments arranged by size: 2573 1483 1156 BmgBI CAC'GTC Cuts at: 1318 2340 1318 Size: 1022 4190 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2943 3901 442 Size: 416 53 83 399 24 1526 958 1753 Fragments arranged by size: 1753 1526 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5212 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3872 1239 Size: 2633 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2378 3337 4202 4500 2378 Size: 959 865 298 3090 Fragments arranged by size: 3090 959 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2048 3875 882 Size: 617 549 1827 2219 Fragments arranged by size: 2219 1827 617 549 BsaAI yAC'GTr Cuts at: 493 1204 3003 493 Size: 711 1799 2702 Fragments arranged by size: 2702 1799 711 BsaBI GATnn'nnATC Cuts at: 5206 5206 Size: 5212 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3019 3401 4036 275 Size: 53 83 186 936 1486 382 635 1451 Fragments arranged by size: 1486 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3645 4043 4317 4464 4875 3645 Size: 398 274 147 411 3982 Fragments arranged by size: 3982 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4987 Fragments arranged by size: 4987 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5212 BseYI C'CCAG_C Cuts at: 2111 2160 4415 4911 2111 Size: 49 2255 496 2412 Fragments arranged by size: 2412 2255 496 49 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4639 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2078 2662 3423 4451 1540 Size: 275 186 77 584 761 1028 2301 Fragments arranged by size: 2301 1028 761 584 275 186 77 BsiHKAI G_wGCw'C Cuts at: 3273 3358 4429 3273 Size: 85 1071 4056 Fragments arranged by size: 4056 1071 85 BsmI GAATG_Cn' Cuts at: 2723 2816 2723 Size: 93 5119 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2097 2159 2531 3273 3358 4429 1391 Size: 399 307 62 372 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 372 307 85 62 BspEI T'CCGG_A Cuts at: 4875 4875 Size: 5212 BspHI T'CATG_A Cuts at: 2212 3101 4831 2212 Size: 889 1730 2593 Fragments arranged by size: 2593 1730 889 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2567 844 Size: 1723 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3099 1394 Size: 429 1276 3507 Fragments arranged by size: 3507 1276 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3707 3881 65 Size: 1183 2459 174 1396 Fragments arranged by size: 2459 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2080 2452 3856 4043 1700 Size: 110 270 372 1404 187 2869 Fragments arranged by size: 2869 1404 372 270 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5212 BssHII G'CGCG_C Cuts at: 1925 2021 1925 Size: 96 5116 BssSI C'ACGA_G Cuts at: 3272 4284 3272 Size: 1012 4200 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5212 BstBI TT'CG_AA Cuts at: 4016 4016 Size: 5212 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5212 BstYI r'GATC_y Cuts at: 1972 2542 2909 3294 3311 4763 4849 4861 5207 Size: 570 367 385 17 1452 86 12 346 Cuts at: 5207 1972 Size: 1977 Fragments arranged by size: 1977 1452 570 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2012 2224 2439 513 Size: 552 939 8 212 215 3286 Fragments arranged by size: 3286 939 552 215 212 8 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4473 Fragments arranged by size: 4473 683 56 BtsI GCAGTG_nn' Cuts at: 2728 3522 3542 2728 Size: 794 20 4398 Fragments arranged by size: 4398 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5212 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5177 DraI TTT'AAA Cuts at: 2516 2516 Size: 5212 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4219 809 Size: 507 2903 1802 Fragments arranged by size: 2903 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2075 2130 2418 Size: 54 1425 50 275 18 245 55 288 Cuts at: 2418 2659 3548 5177 8 Size: 241 889 1629 43 Fragments arranged by size: 1629 1425 889 288 275 245 241 55 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2075 2659 1537 Size: 275 263 584 4090 Fragments arranged by size: 4090 584 275 263 EarI CTCTTCn'nnn_ Cuts at: 1353 3142 1353 Size: 1789 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2263 3799 4173 4319 387 Size: 1064 138 674 1536 374 146 1280 Fragments arranged by size: 1536 1280 1064 674 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3275 3872 4659 4927 1239 Size: 393 1643 597 787 268 1524 Fragments arranged by size: 1643 1524 787 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2187 2187 Size: 5212 EcoRI G'AATT_C Cuts at: 2521 2899 2521 Size: 378 4834 FspI TGC'GCA Cuts at: 3718 3718 Size: 5212 HaeII r_GCGC'y Cuts at: 1678 2054 2370 4359 1678 Size: 376 316 1989 2531 Fragments arranged by size: 2531 1989 376 316 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2026 2058 2194 2226 3853 Size: 32 135 32 454 32 136 32 1627 Cuts at: 3853 3885 3927 3959 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1627 454 136 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2556 2802 669 Size: 988 281 618 246 3079 Fragments arranged by size: 3079 988 618 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5212 HpaI GTT'AAC Cuts at: 2802 2802 Size: 5212 KpnI G_GTAC'C Cuts at: 2537 2537 Size: 5212 MfeI C'AATT_G Cuts at: 2811 2811 Size: 5212 MluI A'CGCG_T Cuts at: 5088 5088 Size: 5212 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4326 4510 1305 Size: 3021 184 2007 Fragments arranged by size: 3021 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2420 10 Size: 54 1425 343 588 2802 Fragments arranged by size: 2802 1425 588 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2324 3170 3529 3688 518 Size: 648 1158 846 359 159 2042 Fragments arranged by size: 2042 1158 846 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2014 2129 2164 2416 2628 3305 4453 4698 Size: 408 115 35 252 212 677 1148 245 Cuts at: 4698 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 408 252 245 212 115 35 NaeI GCC'GGC Cuts at: 2082 2082 Size: 5212 NcoI C'CATG_G Cuts at: 513 1065 2004 2439 513 Size: 552 939 435 3286 Fragments arranged by size: 3286 939 552 435 NdeI CA'TA_TG Cuts at: 387 387 Size: 5212 NgoMIV G'CCGG_C Cuts at: 2080 2080 Size: 5212 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5212 NotI GC'GGCC_GC Cuts at: 2659 2659 Size: 5212 NspI r_CATG'y Cuts at: 1132 1229 2388 2570 4115 1132 Size: 97 1159 182 1545 2229 Fragments arranged by size: 2229 1545 1159 182 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5212 PciI A'CATG_T Cuts at: 4111 4111 Size: 5212 PflMI CCAn_nnn'nTGG Cuts at: 1108 2256 1108 Size: 1148 4064 PmeI GTTT'AAAC Cuts at: 2516 2516 Size: 5212 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3281 3313 4794 4826 3281 Size: 32 1481 32 3667 Fragments arranged by size: 3667 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5212 PsiI TTA'TAA Cuts at: 2782 2782 Size: 5212 PstI C_TGCA'G Cuts at: 830 2564 830 Size: 1734 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5212 PvuII CAG'CTG Cuts at: 2164 2164 Size: 5212 SacII CC_GC'GG Cuts at: 2015 2015 Size: 5212 SalI G'TCGA_C Cuts at: 1936 2554 1936 Size: 618 4594 SbfI CC_TGCA'GG Cuts at: 2564 2564 Size: 5212 ScaI AGT'ACT Cuts at: 3460 5172 3460 Size: 1712 3500 SfcI C'TryA_G Cuts at: 826 1045 2560 3695 4376 4567 826 Size: 219 1515 1135 681 191 1471 Fragments arranged by size: 1515 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5212 SgrAI Cr'CCGG_yG Cuts at: 1700 2080 1700 Size: 380 4832 SmaI CCC'GGG Cuts at: 1872 2154 2539 1872 Size: 282 385 4545 Fragments arranged by size: 4545 385 282 SmlI C'TyrA_G Cuts at: 820 1017 1943 2393 3316 4217 4479 820 Size: 197 926 450 923 901 262 1553 Fragments arranged by size: 1553 926 923 901 450 262 197 SnaBI TAC'GTA Cuts at: 493 3003 493 Size: 2510 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5212 SphI G_CATG'C Cuts at: 1132 2388 2570 1132 Size: 1256 182 3774 Fragments arranged by size: 3774 1256 182 SspI AAT'ATT Cuts at: 5 52 3136 5 Size: 47 3084 2081 Fragments arranged by size: 3084 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5212 StyI C'CwwG_G Cuts at: 513 1065 2004 2439 2651 513 Size: 552 939 435 212 3074 Fragments arranged by size: 3074 939 552 435 212 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2030 3239 3256 3409 3594 4039 325 Size: 1255 450 1209 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1209 450 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3458 5170 96 Size: 274 80 33 51 1443 1481 1712 138 Fragments arranged by size: 1712 1481 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5172 5204 5172 Size: 32 5180 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5212 XbaI T'CTAG_A Cuts at: 2548 2548 Size: 5212 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2428 2428 Size: 5212 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5212 XmaI C'CCGG_G Cuts at: 1870 2152 2537 1870 Size: 282 385 4545 Fragments arranged by size: 4545 385 282 XmnI GAAnn'nnTTC Cuts at: 3341 3341 Size: 5212 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3020 276 Size: 53 83 186 936 1486 2468 Fragments arranged by size: 2468 1486 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SanDI SapI SexAI SfiI SfoI SrfI SwaI