FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0151, 119 aa
  1>>>pF1KE0151 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4055+/-0.000252; mu= 15.6976+/- 0.016
 mean_var=53.1655+/-10.688, 0's: 0 Z-trim(121.5): 6  B-trim: 0 in 0/52
 Lambda= 0.175897
 statistics sampled from 38138 (38144) to 38138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.447), width:  16
 Scan time:  4.970

The best scores are:                                      opt bits E(85289)
NP_004540 (OMIM: 603845) NADH dehydrogenase [ubiqu ( 119)  818 214.0 4.5e-56
NP_001190983 (OMIM: 603845) NADH dehydrogenase [ub (  88)  522 138.8 1.4e-33
NP_001190984 (OMIM: 603845) NADH dehydrogenase [ub (  96)  399 107.6 3.9e-24


>>NP_004540 (OMIM: 603845) NADH dehydrogenase [ubiquinon  (119 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1127.7  bits: 214.0 E(85289): 4.5e-56
Smith-Waterman score: 818; 99.2% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_004 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
               70        80        90       100       110         

>>NP_001190983 (OMIM: 603845) NADH dehydrogenase [ubiqui  (88 aa)
 initn: 540 init1: 522 opt: 522  Z-score: 723.6  bits: 138.8 E(85289): 1.4e-33
Smith-Waterman score: 522; 96.2% identity (97.5% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_001 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
       :::::::::::::::: : :                                       
NP_001 LLYITAFFFAGYYLVKLEAYANLYVDTL                               
               70        80                                       

>>NP_001190984 (OMIM: 603845) NADH dehydrogenase [ubiqui  (96 aa)
 initn: 396 init1: 374 opt: 399  Z-score: 554.4  bits: 107.6 E(85289): 3.9e-24
Smith-Waterman score: 610; 79.8% identity (80.7% similar) in 119 aa overlap (1-119:1-96)

               10        20        30        40        50        60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
       :::::::::::::::::::::::::::::::::::::::::::::.:::::::::     
NP_001 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATA-----
               10        20        30        40        50          

               70        80        90       100       110         
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
                         :::::::::::::::::::::::::::::::::::::::::
NP_001 ------------------DYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
                            60        70        80        90      




119 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:08:32 2016 done: Fri Nov  4 00:08:32 2016
 Total Scan time:  4.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]