FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9438, 183 aa 1>>>pF1KB9438 183 - 183 aa - 183 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0692+/-0.000412; mu= 13.9755+/- 0.025 mean_var=64.5460+/-13.648, 0's: 0 Z-trim(110.9): 17 B-trim: 1122 in 1/50 Lambda= 0.159639 statistics sampled from 19310 (19322) to 19310 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.227), width: 16 Scan time: 4.990 The best scores are: opt bits E(85289) NP_003317 (OMIM: 603594,608446) tumor necrosis fac ( 183) 1191 283.0 1.8e-76 XP_016857719 (OMIM: 603594,608446) PREDICTED: tumo ( 192) 1191 283.0 1.9e-76 XP_016857718 (OMIM: 603594,608446) PREDICTED: tumo ( 194) 1191 283.0 1.9e-76 XP_011508266 (OMIM: 603594,608446) PREDICTED: tumo ( 279) 1191 283.1 2.6e-76 NP_001284491 (OMIM: 603594,608446) tumor necrosis ( 133) 857 206.0 2e-53 XP_016857717 (OMIM: 603594,608446) PREDICTED: tumo ( 215) 859 206.6 2.2e-53 >>NP_003317 (OMIM: 603594,608446) tumor necrosis factor (183 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.8 bits: 283.0 E(85289): 1.8e-76 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEF 130 140 150 160 170 180 pF1KB9 CVL ::: NP_003 CVL >>XP_016857719 (OMIM: 603594,608446) PREDICTED: tumor ne (192 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.4 bits: 283.0 E(85289): 1.9e-76 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:10-192) 10 20 30 40 50 pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQ ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MANQPMIVKMERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSALQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB9 VSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYFSQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB9 EVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELI 130 140 150 160 170 180 180 pF1KB9 LIHQNPGEFCVL :::::::::::: XP_016 LIHQNPGEFCVL 190 >>XP_016857718 (OMIM: 603594,608446) PREDICTED: tumor ne (194 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1493.4 bits: 283.0 E(85289): 1.9e-76 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:12-194) 10 20 30 40 pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSA ::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRPSSANLIVKMERVQPLEENVGNAARPRFERNKLLLVASVIQGLGLLLCFTYICLHFSA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB9 LQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVIINCDGFYLISLKGYF 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB9 SQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGE 130 140 150 160 170 180 170 180 pF1KB9 LILIHQNPGEFCVL :::::::::::::: XP_016 LILIHQNPGEFCVL 190 >>XP_011508266 (OMIM: 603594,608446) PREDICTED: tumor ne (279 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1491.1 bits: 283.1 E(85289): 2.6e-76 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:97-279) 10 20 30 pF1KB9 MERVQPLEENVGNAARPRFERNKLLLVASV :::::::::::::::::::::::::::::: XP_011 FIHGKIMYGKNVKWKERRQGYPSASFLIVKMERVQPLEENVGNAARPRFERNKLLLVASV 70 80 90 100 110 120 40 50 60 70 80 90 pF1KB9 IQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQN 130 140 150 160 170 180 100 110 120 130 140 150 pF1KB9 NSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVY 190 200 210 220 230 240 160 170 180 pF1KB9 LNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL ::::::::::::::::::::::::::::::::: XP_011 LNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL 250 260 270 >>NP_001284491 (OMIM: 603594,608446) tumor necrosis fact (133 aa) initn: 857 init1: 857 opt: 857 Z-score: 1080.0 bits: 206.0 E(85289): 2e-53 Smith-Waterman score: 857; 100.0% identity (100.0% similar) in 132 aa overlap (52-183:2-133) 30 40 50 60 70 80 pF1KB9 NKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQK :::::::::::::::::::::::::::::: NP_001 MVSHRYPRIQSIKVQFTEYKKEKGFILTSQK 10 20 30 90 100 110 120 130 140 pF1KB9 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVA 40 50 60 70 80 90 150 160 170 180 pF1KB9 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL :::::::::::::::::::::::::::::::::::::::::: NP_001 SLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL 100 110 120 130 >>XP_016857717 (OMIM: 603594,608446) PREDICTED: tumor ne (215 aa) initn: 859 init1: 859 opt: 859 Z-score: 1079.5 bits: 206.6 E(85289): 2.2e-53 Smith-Waterman score: 859; 99.2% identity (100.0% similar) in 133 aa overlap (51-183:83-215) 30 40 50 60 70 80 pF1KB9 RNKLLLVASVIQGLGLLLCFTYICLHFSALQVSHRYPRIQSIKVQFTEYKKEKGFILTSQ .::::::::::::::::::::::::::::: XP_016 FLTPWDDKTQDTWLHSRLTDCTTALSRREQKVSHRYPRIQSIKVQFTEYKKEKGFILTSQ 60 70 80 90 100 110 90 100 110 120 130 140 pF1KB9 KEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEDEIMKVQNNSVIINCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMV 120 130 140 150 160 170 150 160 170 180 pF1KB9 ASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL ::::::::::::::::::::::::::::::::::::::::::: XP_016 ASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL 180 190 200 210 183 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:11:02 2016 done: Sun Nov 6 22:11:03 2016 Total Scan time: 4.990 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]