FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9910, 590 aa 1>>>pF1KB9910 590 - 590 aa - 590 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7931+/-0.000401; mu= 16.4133+/- 0.025 mean_var=68.8299+/-13.757, 0's: 0 Z-trim(110.9): 18 B-trim: 18 in 1/56 Lambda= 0.154592 statistics sampled from 19335 (19342) to 19335 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.227), width: 16 Scan time: 8.540 The best scores are: opt bits E(85289) NP_945327 (OMIM: 605297) negative elongation facto ( 599) 3886 876.2 0 >>NP_945327 (OMIM: 605297) negative elongation factor C/ (599 aa) initn: 3886 init1: 3886 opt: 3886 Z-score: 4681.1 bits: 876.2 E(85289): 0 Smith-Waterman score: 3886; 100.0% identity (100.0% similar) in 590 aa overlap (1-590:10-599) 10 20 30 40 50 pF1KB9 MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 MRRARSREGMAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB9 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB9 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB9 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB9 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB9 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB9 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL 370 380 390 400 410 420 420 430 440 450 460 470 pF1KB9 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ 430 440 450 460 470 480 480 490 500 510 520 530 pF1KB9 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR 490 500 510 520 530 540 540 550 560 570 580 590 pF1KB9 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_945 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN 550 560 570 580 590 590 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 09:53:38 2016 done: Fri Nov 4 09:53:40 2016 Total Scan time: 8.540 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]