FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9910, 590 aa 1>>>pF1KB9910 590 - 590 aa - 590 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0949+/-0.000976; mu= 14.6035+/- 0.059 mean_var=69.8229+/-13.890, 0's: 0 Z-trim(104.1): 11 B-trim: 5 in 1/50 Lambda= 0.153488 statistics sampled from 7717 (7720) to 7717 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.237), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS13473.2 NELFCD gene_id:51497|Hs108|chr20 ( 599) 3886 870.0 0 >>CCDS13473.2 NELFCD gene_id:51497|Hs108|chr20 (599 aa) initn: 3886 init1: 3886 opt: 3886 Z-score: 4647.6 bits: 870.0 E(32554): 0 Smith-Waterman score: 3886; 100.0% identity (100.0% similar) in 590 aa overlap (1-590:10-599) 10 20 30 40 50 pF1KB9 MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MRRARSREGMAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB9 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB9 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB9 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB9 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB9 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB9 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL 370 380 390 400 410 420 420 430 440 450 460 470 pF1KB9 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ 430 440 450 460 470 480 480 490 500 510 520 530 pF1KB9 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR 490 500 510 520 530 540 540 550 560 570 580 590 pF1KB9 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN 550 560 570 580 590 590 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 09:53:38 2016 done: Fri Nov 4 09:53:38 2016 Total Scan time: 2.520 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]