(Circular) (Six-base) MAPSORT of: pFN21AB6964.seq Check: 4696 from: 1 to: 5428 pFN21AB6964 5428 bp With 182 enzymes: SgfI * October 20, 2009 10:42 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3238 278 Size: 53 83 186 936 1702 2468 Fragments arranged by size: 2468 1702 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2366 2451 2771 1937 Size: 429 85 320 4594 Fragments arranged by size: 4594 429 320 85 Acc65I G'GTAC_C Cuts at: 2749 2749 Size: 5428 AclI AA'CG_TT Cuts at: 1563 3555 3928 1563 Size: 1992 373 3063 Fragments arranged by size: 3063 1992 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3491 4875 5143 1632 Size: 1859 1384 268 1917 Fragments arranged by size: 1917 1859 1384 268 AflII C'TTAA_G Cuts at: 820 1017 2716 820 Size: 197 1699 3532 Fragments arranged by size: 3532 1699 197 AflIII A'CryG_T Cuts at: 1203 4327 5304 1203 Size: 3124 977 1327 Fragments arranged by size: 3124 1327 977 AgeI A'CCGG_T Cuts at: 4259 4259 Size: 5428 AhdI GACnn_n'nnGTC Cuts at: 4157 4157 Size: 5428 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5428 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5428 AlwNI CAG_nnn'CTG Cuts at: 2530 3171 4743 2530 Size: 641 1572 3215 Fragments arranged by size: 3215 1572 641 ApaI G_GGCC'C Cuts at: 2078 2078 Size: 5428 ApaLI G'TGCA_C Cuts at: 3485 4641 3485 Size: 1156 4272 ApoI r'AATT_y Cuts at: 1493 2737 2963 3115 5224 1493 Size: 1244 226 152 2109 1697 Fragments arranged by size: 2109 1697 1244 226 152 AseI AT'TA_AT Cuts at: 160 1032 3982 160 Size: 872 2950 1606 Fragments arranged by size: 2950 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5428 AvaI C'yCGr_G Cuts at: 1870 1943 2753 1870 Size: 73 810 4545 Fragments arranged by size: 4545 810 73 BamHI G'GATC_C Cuts at: 2758 3125 2758 Size: 367 5061 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2749 4204 618 Size: 325 217 627 962 1455 1842 Fragments arranged by size: 1842 1455 962 627 325 217 BanII G_rGCy'C Cuts at: 1391 2078 2747 1391 Size: 687 669 4072 Fragments arranged by size: 4072 687 669 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2614 928 Size: 971 715 3742 Fragments arranged by size: 3742 971 715 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3619 3653 1903 Size: 34 1682 34 3678 Fragments arranged by size: 3678 1682 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3320 4530 3320 Size: 1210 4218 BclI T'GATC_A Cuts at: 1548 1548 Size: 5428 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4039 136 Size: 107 122 71 631 605 2367 1525 Fragments arranged by size: 2367 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5423 5423 Size: 5428 BlpI GC'TnA_GC Cuts at: 2506 2845 2506 Size: 339 5089 Bme1580I G_kGCm'C Cuts at: 1790 2078 3489 4645 1790 Size: 288 1411 1156 2573 Fragments arranged by size: 2573 1411 1156 288 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5428 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2664 3159 4117 Size: 416 53 83 399 24 1247 495 958 Cuts at: 4117 442 Size: 1753 Fragments arranged by size: 1753 1247 958 495 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5428 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2157 2520 4088 1239 Size: 918 363 1568 2579 Fragments arranged by size: 2579 1568 918 363 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3553 4418 4716 3553 Size: 865 298 4265 Fragments arranged by size: 4265 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4091 882 Size: 617 2592 2219 Fragments arranged by size: 2592 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3219 493 Size: 711 2015 2702 Fragments arranged by size: 2702 2015 711 BsaBI GATnn'nnATC Cuts at: 5422 5422 Size: 5428 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3235 3617 4252 275 Size: 53 83 186 936 1702 382 635 1451 Fragments arranged by size: 1702 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2667 3861 4259 4533 4680 5091 2667 Size: 1194 398 274 147 411 3004 Fragments arranged by size: 3004 1194 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5203 Fragments arranged by size: 5203 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5428 BseYI C'CCAG_C Cuts at: 4631 5127 4631 Size: 496 4932 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4855 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2878 3639 4667 1540 Size: 275 186 877 761 1028 2301 Fragments arranged by size: 2301 1028 877 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3489 3574 4645 3489 Size: 85 1071 4272 Fragments arranged by size: 4272 1071 85 BsmI GAATG_Cn' Cuts at: 2317 2939 3032 2317 Size: 622 93 4713 Fragments arranged by size: 4713 622 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2078 2747 3489 3574 4645 1391 Size: 399 288 669 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 669 399 288 85 BspEI T'CCGG_A Cuts at: 2667 5091 2667 Size: 2424 3004 BspHI T'CATG_A Cuts at: 3317 5047 3317 Size: 1730 3698 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2783 844 Size: 1939 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3315 1394 Size: 429 1492 3507 Fragments arranged by size: 3507 1492 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2364 3923 4097 65 Size: 1183 1116 1559 174 1396 Fragments arranged by size: 1559 1396 1183 1116 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4072 4259 1700 Size: 110 2262 187 2869 Fragments arranged by size: 2869 2262 187 110 BsrGI T'GTAC_A Cuts at: 96 2649 96 Size: 2553 2875 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5428 BssSI C'ACGA_G Cuts at: 3488 4500 3488 Size: 1012 4416 BstAPI GCAn_nnn'nTGC Cuts at: 794 2156 2354 794 Size: 1362 198 3868 Fragments arranged by size: 3868 1362 198 BstBI TT'CG_AA Cuts at: 4232 4232 Size: 5428 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5428 BstXI CCAn_nnnn'nTGG Cuts at: 2608 2608 Size: 5428 BstYI r'GATC_y Cuts at: 1972 2670 2758 3125 3510 3527 4979 5065 5077 Size: 698 88 367 385 17 1452 86 12 Cuts at: 5077 5423 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 698 385 367 346 88 86 17 12 BstZ17I GTA'TAC Cuts at: 2452 2452 Size: 5428 BtgI C'CryG_G Cuts at: 513 1065 2070 513 Size: 552 1005 3871 Fragments arranged by size: 3871 1005 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4689 Fragments arranged by size: 4689 683 56 BtsI GCAGTG_nn' Cuts at: 2944 3738 3758 2944 Size: 794 20 4614 Fragments arranged by size: 4614 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5428 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5393 DraI TTT'AAA Cuts at: 2732 2732 Size: 5428 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2237 4435 809 Size: 507 921 2198 1802 Fragments arranged by size: 2198 1802 921 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2875 3764 5393 Size: 54 1425 50 275 18 1045 889 1629 Cuts at: 5393 8 Size: 43 Fragments arranged by size: 1629 1425 1045 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2875 1537 Size: 275 1063 4090 Fragments arranged by size: 4090 1063 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3358 1353 Size: 2005 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4015 4389 4535 387 Size: 1064 138 2426 374 146 1280 Fragments arranged by size: 2426 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2157 2520 3491 4088 4875 5143 1239 Size: 393 525 363 971 597 787 268 1524 Fragments arranged by size: 1524 971 787 597 525 393 363 268 EcoO109I rG'GnC_Cy Cuts at: 2075 2075 Size: 5428 EcoRI G'AATT_C Cuts at: 2737 3115 2737 Size: 378 5050 FspI TGC'GCA Cuts at: 3934 3934 Size: 5428 HaeII r_GCGC'y Cuts at: 1678 2389 4575 1678 Size: 711 2186 2531 Fragments arranged by size: 2531 2186 711 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4069 4101 4143 4175 1373 Size: 32 135 32 2497 32 42 32 2626 Fragments arranged by size: 2626 2497 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2772 3018 669 Size: 988 281 834 246 3079 Fragments arranged by size: 3079 988 834 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5428 HpaI GTT'AAC Cuts at: 3018 3018 Size: 5428 KpnI G_GTAC'C Cuts at: 2753 2753 Size: 5428 MfeI C'AATT_G Cuts at: 2130 2151 2349 3027 2130 Size: 21 198 678 4531 Fragments arranged by size: 4531 678 198 21 MluI A'CGCG_T Cuts at: 5304 5304 Size: 5428 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4542 4726 1305 Size: 3237 184 2007 Fragments arranged by size: 3237 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3606 Fragments arranged by size: 3606 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3386 3745 3904 518 Size: 648 2220 359 159 2042 Fragments arranged by size: 2220 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2072 2086 2253 2584 2844 3521 4669 4914 Size: 466 14 167 331 260 677 1148 245 Cuts at: 4914 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 466 331 260 245 167 14 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4876 NdeI CA'TA_TG Cuts at: 387 387 Size: 5428 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5428 NotI GC'GGCC_GC Cuts at: 2875 2875 Size: 5428 NspI r_CATG'y Cuts at: 1132 1229 2563 2579 2786 4331 1132 Size: 97 1334 16 207 1545 2229 Fragments arranged by size: 2229 1545 1334 207 97 16 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5428 PciI A'CATG_T Cuts at: 4327 4327 Size: 5428 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5428 PmeI GTTT'AAAC Cuts at: 2732 2732 Size: 5428 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3497 3529 5010 5042 3497 Size: 32 1481 32 3883 Fragments arranged by size: 3883 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5428 PsiI TTA'TAA Cuts at: 2998 2998 Size: 5428 PspOMI G'GGCC_C Cuts at: 2074 2074 Size: 5428 PstI C_TGCA'G Cuts at: 830 2780 830 Size: 1950 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5428 PvuII CAG'CTG Cuts at: 2086 2086 Size: 5428 SacII CC_GC'GG Cuts at: 2073 2073 Size: 5428 SalI G'TCGA_C Cuts at: 1936 2770 1936 Size: 834 4594 SbfI CC_TGCA'GG Cuts at: 2780 2780 Size: 5428 ScaI AGT'ACT Cuts at: 3676 5388 3676 Size: 1712 3716 SexAI A'CCwGG_T Cuts at: 2541 2541 Size: 5428 SfcI C'TryA_G Cuts at: 826 1045 2016 2522 2776 3911 4592 4783 826 Size: 219 971 506 254 1135 681 191 1471 Fragments arranged by size: 1471 1135 971 681 506 254 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5428 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5428 SmaI CCC'GGG Cuts at: 1872 2755 1872 Size: 883 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2716 3532 4433 4695 820 Size: 197 926 773 816 901 262 1553 Fragments arranged by size: 1553 926 901 816 773 262 197 SnaBI TAC'GTA Cuts at: 493 3219 493 Size: 2726 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5428 SphI G_CATG'C Cuts at: 1132 2786 1132 Size: 1654 3774 SspI AAT'ATT Cuts at: 5 52 3352 5 Size: 47 3300 2081 Fragments arranged by size: 3300 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5428 StyI C'CwwG_G Cuts at: 513 1065 2589 2867 513 Size: 552 1524 278 3074 Fragments arranged by size: 3074 1524 552 278 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3455 3472 3625 3810 4255 325 Size: 1255 1875 17 153 185 445 1498 Fragments arranged by size: 1875 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2649 3674 5386 Size: 274 80 33 51 1443 672 1025 1712 Cuts at: 5386 96 Size: 138 Fragments arranged by size: 1712 1443 1025 672 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5388 5420 5388 Size: 32 5396 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5428 XbaI T'CTAG_A Cuts at: 2764 2764 Size: 5428 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5428 XmaI C'CCGG_G Cuts at: 1870 2753 1870 Size: 883 4545 XmnI GAAnn'nnTTC Cuts at: 3557 3557 Size: 5428 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3236 276 Size: 53 83 186 936 1702 2468 Fragments arranged by size: 2468 1702 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SacII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SanDI SapI SfiI SfoI SrfI SwaI XcmI