Result of FASTA (ccds) for
pFN21AB6881
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6881, 181 aa
1>>>pF1KB6881 181 - 181 aa - 181 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2109+/-0.00104; mu= 13.5049+/- 0.063
mean_var=87.6093+/-18.868, 0's: 0 Z-trim(104.8): 165 B-trim: 282 in 1/48
Lambda= 0.137025
statistics sampled from 7876 (8078) to 7876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.248), width: 16
Scan time: 1.520
The best scores are: opt bits E(32554)
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 1186 244.3 3.1e-65
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 1153 237.7 2.9e-63
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 960 199.6 8.7e-52
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 957 199.0 1.3e-51
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 860 179.8 7.7e-46
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 719 152.0 1.9e-37
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 697 148.1 9e-36
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 613 131.5 8.9e-31
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 598 128.0 3e-30
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 598 128.0 3e-30
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 584 125.7 4.6e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 561 120.7 4.9e-28
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 545 117.6 4.6e-27
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 541 116.8 7.6e-27
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 525 113.6 7.1e-26
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 525 113.6 7.3e-26
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 507 109.9 6.5e-25
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 505 109.7 1.1e-24
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 490 106.6 6.9e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 491 106.9 7.1e-24
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 474 103.6 7.9e-23
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 472 103.1 9.8e-23
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 448 98.4 2.7e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 432 94.9 1.4e-20
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 432 95.1 1.9e-20
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 432 95.2 2.3e-20
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 432 95.2 2.3e-20
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 426 93.9 4e-20
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 426 93.9 4e-20
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 424 93.4 4.4e-20
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 424 93.4 4.4e-20
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 399 88.7 2.2e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 386 86.1 1.3e-17
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 370 82.9 1e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 354 79.8 1.1e-15
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 322 73.5 8.9e-14
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 321 73.6 1.7e-13
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 311 71.3 3.6e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 307 70.5 6.8e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 294 68.0 4e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 295 68.3 4.1e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 292 67.5 4.4e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 281 65.3 1.9e-11
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 1186 init1: 1186 opt: 1186 Z-score: 1284.6 bits: 244.3 E(32554): 3.1e-65
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
pF1KB6 K
:
CCDS87 K
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 1153 init1: 1153 opt: 1153 Z-score: 1249.3 bits: 237.7 E(32554): 2.9e-63
Smith-Waterman score: 1153; 96.1% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:::::.::.:.:.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
:::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
pF1KB6 K
:
CCDS15 K
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1043.2 bits: 199.6 E(32554): 8.7e-52
Smith-Waterman score: 960; 78.9% identity (94.4% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: ...:.. :.:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: ::::::::::.:::::.::::::::::::::::::::..:. .::..:: :::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
::.::::::::::: .:.::::::.:::.:.::.::::::.: :::::::::.:.:...
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
pF1KB6 K
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1040.0 bits: 199.0 E(32554): 1.3e-51
Smith-Waterman score: 957; 78.9% identity (93.3% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: . :.. ..:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
:::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.:::::...:...
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
pF1KB6 K
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 878 init1: 836 opt: 860 Z-score: 936.5 bits: 179.8 E(32554): 7.7e-46
Smith-Waterman score: 860; 69.5% identity (90.2% similar) in 174 aa overlap (6-179:2-175)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:..:....:.:::::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... :.
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
pF1KB6 K
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 719 init1: 719 opt: 719 Z-score: 785.7 bits: 152.0 E(32554): 1.9e-37
Smith-Waterman score: 719; 56.9% identity (87.8% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::..:.....::.: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
:.:::::::. .::...:....::: .:. :.: : : ::.: :: :...::.. ::..
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
pF1KB6 K
.
CCDS44 Q
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 694 init1: 558 opt: 697 Z-score: 755.7 bits: 148.1 E(32554): 9e-36
Smith-Waterman score: 697; 62.3% identity (85.6% similar) in 167 aa overlap (13-177:399-565)
10 20 30 40
pF1KB6 MGNIFGNLLKSLIGKK-EMRILMVGLDAAGKTTILYKLKLGE
:: : :.:.. .:::.:::::::.::: :
CCDS39 KQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDE
370 380 390 400 410 420
50 60 70 80 90 100
pF1KB6 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
.. :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..
CCDS39 FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRIS
430 440 450 460 470 480
110 120 130 140 150 160
pF1KB6 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCA
::. :: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. :
CCDS39 EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDA
490 500 510 520 530 540
170 180
pF1KB6 TSGDGLYEGLDWLANQLKNKK
:: :::::::::. ::
CCDS39 RSGMGLYEGLDWLSRQLVAAGVLDVA
550 560 570
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 606 init1: 558 opt: 613 Z-score: 666.0 bits: 131.5 E(32554): 8.9e-31
Smith-Waterman score: 613; 60.5% identity (85.5% similar) in 152 aa overlap (13-162:399-550)
10 20 30 40
pF1KB6 MGNIFGNLLKSLIGKK-EMRILMVGLDAAGKTTILYKLKLGE
:: : :.:.. .:::.:::::::.::: :
CCDS43 KQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDE
370 380 390 400 410 420
50 60 70 80 90 100
pF1KB6 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
.. :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..
CCDS43 FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRIS
430 440 450 460 470 480
110 120 130 140 150 160
pF1KB6 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCA
::. :: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. :
CCDS43 EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDA
490 500 510 520 530 540
170 180
pF1KB6 TSGDGLYEGLDWLANQLKNKK
:
CCDS43 RSVFQIICDQYTGKEVVTEKG
550 560
>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 (179 aa)
initn: 588 init1: 588 opt: 598 Z-score: 656.4 bits: 128.0 E(32554): 3e-30
Smith-Waterman score: 598; 48.9% identity (79.8% similar) in 178 aa overlap (1-178:1-177)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: .: . . :....: ....:::: ::::::::.....:.: : :::: ::: . .:
CCDS21 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: .::.:::...: : :. ::. .: ::::.::::.. .::::..:::...:: :
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
::.::::::. . :..:::.. : : :.. ..:.::: :: .:.:: .::.:. ..::
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
120 130 140 150 160 170
pF1KB6 K
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 598 init1: 583 opt: 598 Z-score: 656.4 bits: 128.0 E(32554): 3e-30
Smith-Waterman score: 598; 49.7% identity (79.7% similar) in 177 aa overlap (1-177:1-176)
10 20 30 40 50 60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: ::..: ::. ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
CCDS71 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
120 130 140 150 160 170
pF1KB6 K
181 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:35:31 2016 done: Fri Nov 4 14:35:32 2016
Total Scan time: 1.520 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]