Result of FASTA (omim) for pFN21AB6539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6539, 368 aa
  1>>>pF1KB6539 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3936+/-0.000427; mu= 16.4794+/- 0.026
 mean_var=100.1705+/-20.620, 0's: 0 Z-trim(113.6): 143  B-trim: 692 in 1/50
 Lambda= 0.128146
 statistics sampled from 22789 (22971) to 22789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.269), width:  16
 Scan time:  6.900

The best scores are:                                      opt bits E(85289)
NP_001129498 (OMIM: 600152) protein SEC13 homolog  ( 368) 2591 489.8  4e-138
XP_016862508 (OMIM: 600152) PREDICTED: protein SEC ( 368) 2591 489.8  4e-138
NP_109598 (OMIM: 600152) protein SEC13 homolog iso ( 325) 2288 433.8 2.7e-121
XP_005265436 (OMIM: 600152) PREDICTED: protein SEC ( 325) 2288 433.8 2.7e-121
NP_899195 (OMIM: 600152) protein SEC13 homolog iso ( 322) 2267 429.9 3.9e-120
NP_001129704 (OMIM: 600152) protein SEC13 homolog  ( 308) 2181 414.0 2.3e-115
XP_016862509 (OMIM: 600152) PREDICTED: protein SEC ( 301) 2039 387.7 1.8e-107
XP_016862510 (OMIM: 600152) PREDICTED: protein SEC ( 298) 2018 383.8 2.7e-106
NP_001265875 (OMIM: 600152) protein SEC13 homolog  ( 194) 1054 205.4 8.9e-53
NP_112493 (OMIM: 609263) nucleoporin SEH1 isoform  ( 360)  346 74.8 3.5e-13
NP_001013455 (OMIM: 609263) nucleoporin SEH1 isofo ( 421)  346 74.9 3.9e-13
XP_011524046 (OMIM: 609263) PREDICTED: nucleoporin ( 380)  316 69.3 1.7e-11
XP_011524044 (OMIM: 609263) PREDICTED: nucleoporin ( 441)  316 69.3 1.9e-11
NP_004795 (OMIM: 604333) probable cytosolic iron-s ( 339)  255 57.9 3.8e-08
NP_060726 (OMIM: 616620) ribosome biogenesis prote ( 423)  195 46.9 9.8e-05
XP_016881514 (OMIM: 609263) PREDICTED: nucleoporin ( 311)  184 44.8 0.00032
XP_005258209 (OMIM: 609263) PREDICTED: nucleoporin ( 372)  184 44.9 0.00037
XP_011524045 (OMIM: 609263) PREDICTED: nucleoporin ( 392)  184 44.9 0.00038
XP_011509771 (OMIM: 616620) PREDICTED: ribosome bi ( 285)  180 44.0 0.00051
NP_002884 (OMIM: 300825) histone-binding protein R ( 425)  171 42.5  0.0021
NP_001185648 (OMIM: 300825) histone-binding protei ( 469)  171 42.6  0.0023
XP_016881516 (OMIM: 609263) PREDICTED: nucleoporin ( 235)  166 41.3  0.0027
XP_011524048 (OMIM: 609263) PREDICTED: nucleoporin ( 296)  166 41.4  0.0031
XP_016881515 (OMIM: 609263) PREDICTED: nucleoporin ( 296)  166 41.4  0.0031
XP_011524047 (OMIM: 609263) PREDICTED: nucleoporin ( 316)  166 41.5  0.0033
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285)  163 40.9  0.0045
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323)  163 40.9  0.0049
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199)  160 40.1  0.0052
NP_620640 (OMIM: 601787) transcription initiation  ( 745)  166 41.8  0.0059
NP_008882 (OMIM: 601787) transcription initiation  ( 800)  166 41.9  0.0062
NP_001273158 (OMIM: 610617) denticleless protein h ( 459)  163 41.1  0.0063
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427)  162 40.9  0.0068
NP_001310943 (OMIM: 605002) coronin-2B isoform 2 [ ( 475)  162 40.9  0.0073
NP_001177385 (OMIM: 605002) coronin-2B isoform 2 [ ( 475)  162 40.9  0.0073
NP_001177386 (OMIM: 605002) coronin-2B isoform 2 [ ( 475)  162 40.9  0.0073
NP_001310944 (OMIM: 605002) coronin-2B isoform 2 [ ( 475)  162 40.9  0.0073
NP_006082 (OMIM: 605002) coronin-2B isoform 1 [Hom ( 480)  162 40.9  0.0073
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514)  162 40.9  0.0077
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514)  162 40.9  0.0077
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514)  162 40.9  0.0077
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514)  162 40.9  0.0077
XP_011507916 (OMIM: 610617) PREDICTED: denticleles ( 668)  163 41.2  0.0081
NP_001273159 (OMIM: 610617) denticleless protein h ( 688)  163 41.2  0.0083
NP_057532 (OMIM: 610617) denticleless protein homo ( 730)  163 41.3  0.0086


>>NP_001129498 (OMIM: 600152) protein SEC13 homolog isof  (368 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2600.7  bits: 489.8 E(85289): 4e-138
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
              310       320       330       340       350       360

               
pF1KB6 TEGQQNEQ
       ::::::::
NP_001 TEGQQNEQ
               

>>XP_016862508 (OMIM: 600152) PREDICTED: protein SEC13 h  (368 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2600.7  bits: 489.8 E(85289): 4e-138
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
              310       320       330       340       350       360

               
pF1KB6 TEGQQNEQ
       ::::::::
XP_016 TEGQQNEQ
               

>>NP_109598 (OMIM: 600152) protein SEC13 homolog isoform  (325 aa)
 initn: 2288 init1: 2288 opt: 2288  Z-score: 2298.6  bits: 433.8 E(85289): 2.7e-121
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 325 aa overlap (44-368:1-325)

            20        30        40        50        60        70   
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                     ::::::::::::::::::::::::::::::
NP_109                               MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                             10        20        30

            80        90       100       110       120       130   
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
              160       170       180       190       200       210

           260       270       280       290       300       310   
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
              220       230       240       250       260       270

           320       330       340       350       360        
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300       310       320     

>>XP_005265436 (OMIM: 600152) PREDICTED: protein SEC13 h  (325 aa)
 initn: 2288 init1: 2288 opt: 2288  Z-score: 2298.6  bits: 433.8 E(85289): 2.7e-121
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 325 aa overlap (44-368:1-325)

            20        30        40        50        60        70   
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                     ::::::::::::::::::::::::::::::
XP_005                               MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                             10        20        30

            80        90       100       110       120       130   
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
              160       170       180       190       200       210

           260       270       280       290       300       310   
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
              220       230       240       250       260       270

           320       330       340       350       360        
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300       310       320     

>>NP_899195 (OMIM: 600152) protein SEC13 homolog isoform  (322 aa)
 initn: 2267 init1: 2267 opt: 2267  Z-score: 2277.7  bits: 429.9 E(85289): 3.9e-120
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 322 aa overlap (47-368:1-322)

         20        30        40        50        60        70      
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                     ::::::::::::::::::::::::::::::
NP_899                               MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                             10        20        30

         80        90       100       110       120       130      
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
              220       230       240       250       260       270

        320       330       340       350       360        
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300       310       320  

>>NP_001129704 (OMIM: 600152) protein SEC13 homolog isof  (308 aa)
 initn: 2181 init1: 2181 opt: 2181  Z-score: 2192.0  bits: 414.0 E(85289): 2.3e-115
Smith-Waterman score: 2181; 100.0% identity (100.0% similar) in 308 aa overlap (61-368:1-308)

               40        50        60        70        80        90
pF1KB6 KLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
                                     ::::::::::::::::::::::::::::::
NP_001                               MIHDAQMDYYGTRLATCSSDRSVKIFDVRN
                                             10        20        30

              100       110       120       130       140       150
pF1KB6 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KB6 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KB6 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KB6 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
              220       230       240       250       260       270

              340       350       360        
pF1KB6 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       ::::::::::::::::::::::::::::::::::::::
NP_001 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
              280       290       300        

>>XP_016862509 (OMIM: 600152) PREDICTED: protein SEC13 h  (301 aa)
 initn: 2207 init1: 2039 opt: 2039  Z-score: 2050.3  bits: 387.7 E(85289): 1.8e-107
Smith-Waterman score: 2039; 99.3% identity (99.3% similar) in 291 aa overlap (44-334:1-291)

            20        30        40        50        60        70   
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                     ::::::::::::::::::::::::::::::
XP_016                               MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
                                             10        20        30

            80        90       100       110       120       130   
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
              160       170       180       190       200       210

           260       270       280       290       300       310   
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
              220       230       240       250       260       270

           320       330       340       350       360        
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       ::::::::::::::::::  :                                  
XP_016 VSWSITANILAVSGGDNKEELQMQPQIDHLP                        
              280       290       300                         

>>XP_016862510 (OMIM: 600152) PREDICTED: protein SEC13 h  (298 aa)
 initn: 2186 init1: 2018 opt: 2018  Z-score: 2029.3  bits: 383.8 E(85289): 2.7e-106
Smith-Waterman score: 2018; 99.3% identity (99.3% similar) in 288 aa overlap (47-334:1-288)

         20        30        40        50        60        70      
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                     ::::::::::::::::::::::::::::::
XP_016                               MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                             10        20        30

         80        90       100       110       120       130      
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
              220       230       240       250       260       270

        320       330       340       350       360        
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
       :::::::::::::::  :                                  
XP_016 SITANILAVSGGDNKEELQMQPQIDHLP                        
              280       290                                

>>NP_001265875 (OMIM: 600152) protein SEC13 homolog isof  (194 aa)
 initn: 1188 init1: 1054 opt: 1054  Z-score: 1068.5  bits: 205.4 E(85289): 8.9e-53
Smith-Waterman score: 1054; 99.3% identity (100.0% similar) in 151 aa overlap (47-197:1-151)

         20        30        40        50        60        70      
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                     ::::::::::::::::::::::::::::::
NP_001                               MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
                                             10        20        30

         80        90       100       110       120       130      
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
       .                                                           
NP_001 VSPSPAFRAVRAPALPRVCCSLPRGWHGRVPAGQWAGEWSADQT                
              160       170       180       190                    

>>NP_112493 (OMIM: 609263) nucleoporin SEH1 isoform 2 [H  (360 aa)
 initn: 493 init1: 158 opt: 346  Z-score: 357.7  bits: 74.8 E(85289): 3.5e-13
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)

      20        30        40        50        60        70         
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
                                     :  .. ..:.:.:::...:..: :.:::::
NP_112                             MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
                                           10        20        30  

      80        90        100       110       120       130        
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
       :.:::..:  ..:.    :. . : : ::.:.:::: .:..:::::.:: . .:.:  : 
NP_112 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
             40        50        60        70        80        90  

                140       150       160       170          180     
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
                 : :    .   .::..: .::. .::.::  :.:: . .       . .:
NP_112 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
            100       110       120       130       140       150  

         190       200         210       220        230       240  
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
       : ... . .  ..:. .:: :.   . . .:   : .. :: . .         ..... 
NP_112 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
             160       170       180       190                200  

             250       260       270       280        290       300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
       .:.  .. . . : . .: :.:.:.::..:     .:  ..: :.: .       ... .
NP_112 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
            210       220       230       240       250       260  

                      310       320       330       340       350  
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
       :     ... .:   :. ::.:::.::...:: :: :. : ::: .   .: : . . ::
NP_112 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
            270       280       290       300       310        320 

             360                              
pF1KB6 QGS-VSASVTEGQQNEQ                      
       .:: :..:  .: .:                        
NP_112 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRKHS
             330       340       350       360




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:10:10 2016 done: Fri Nov  4 16:10:11 2016
 Total Scan time:  6.900 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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