Result of FASTA (ccds) for pFN21AB6761
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6761, 109 aa
  1>>>pF1KB6761 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5391+/-0.000522; mu= 14.0390+/- 0.031
 mean_var=56.4572+/-10.859, 0's: 0 Z-trim(113.8): 50  B-trim: 7 in 1/51
 Lambda= 0.170693
 statistics sampled from 14340 (14390) to 14340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.442), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  666 170.8 1.3e-43
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17          (  99)  489 127.2 1.8e-30
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17         (  97)  449 117.4 1.6e-27
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17          (  99)  443 115.9 4.5e-27
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17         (  98)  422 110.7 1.6e-25
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  259 70.6 1.9e-13
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  248 67.9 1.2e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7          ( 119)  231 63.8 2.7e-11
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17          (  91)  225 62.2 6.1e-11
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17          (  92)  225 62.2 6.2e-11


>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17               (99 aa)
 initn: 666 init1: 666 opt: 666  Z-score: 896.3  bits: 170.8 E(32554): 1.3e-43
Smith-Waterman score: 666; 100.0% identity (100.0% similar) in 99 aa overlap (11-109:1-99)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11           MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
               60        70        80        90         

>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17               (99 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 660.7  bits: 127.2 E(32554): 1.8e-30
Smith-Waterman score: 489; 74.5% identity (84.7% similar) in 98 aa overlap (11-108:1-98)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::.::::::::: ::.: ::::::: .::. .:::: : :.::  ::: :
CCDS11           MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLAS
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       ::: :::.::.::::::: . ::::::: :::::: : ::::.::::: 
CCDS11 YRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
               60        70        80        90         

>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17              (97 aa)
 initn: 356 init1: 342 opt: 449  Z-score: 607.6  bits: 117.4 E(32554): 1.6e-27
Smith-Waterman score: 449; 69.4% identity (85.7% similar) in 98 aa overlap (11-108:1-96)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::.::::: ::: :::::::::: :...   ::::. . :.::: :::::
CCDS11           MKVSAALLWLLLIAAAFSPQGLAGPASV--PTTCCFNLANRKIPLQRLES
                         10        20          30        40        

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       ::: ::..::..:::::::: :.::::: .::::: ::.::.:. ::: 
CCDS11 YRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       50        60        70        80        90       

>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17               (99 aa)
 initn: 459 init1: 439 opt: 443  Z-score: 599.5  bits: 115.9 E(32554): 4.5e-27
Smith-Waterman score: 443; 65.3% identity (81.6% similar) in 98 aa overlap (11-108:1-98)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::.::::::::: ::.::::::::: ...   :::.  ::.::: :::::
CCDS11           MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       : : :. .::.::::::::  ::.:::: ..::.: :::::.  :. : 
CCDS11 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
               60        70        80        90         

>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17              (98 aa)
 initn: 420 init1: 231 opt: 422  Z-score: 571.6  bits: 110.7 E(32554): 1.6e-25
Smith-Waterman score: 422; 64.3% identity (85.7% similar) in 98 aa overlap (11-108:1-97)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::.::.:::::: .:::.::::::: ..:. .:::. : .:::  :::.:
CCDS11           MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKS
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       :  ::: .::..::::.::: ::::::: .::::..:::: .:..: : 
CCDS11 YVITTS-RCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
                60        70        80        90        

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 283 init1: 146 opt: 259  Z-score: 355.1  bits: 70.6 E(32554): 1.9e-13
Smith-Waterman score: 259; 38.5% identity (73.6% similar) in 91 aa overlap (11-101:1-90)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::  ...: ::. .:::   .:. :.: .  :.::. .  .:.:.. . .
CCDS11           MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVD
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       : .: :: : . ::.:.:: .:..::::...:::...  :.        
CCDS11 YYET-SSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN      
                60        70        80        90        

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 229 init1: 140 opt: 248  Z-score: 340.4  bits: 67.9 E(32554): 1.2e-12
Smith-Waterman score: 248; 37.4% identity (74.7% similar) in 91 aa overlap (11-101:1-90)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 :..:.: : .:: . :.  : :. :.. .: :.::. . ...::.. . .
CCDS32           MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD
                         10        20        30        40        50

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       : .: ::.: . .::: ::  ...::::...::: ... :.        
CCDS32 YFET-SSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA     
                60        70        80        90        

>>CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7               (119 aa)
 initn: 258 init1: 222 opt: 231  Z-score: 316.2  bits: 63.8 E(32554): 2.7e-11
Smith-Waterman score: 231; 36.0% identity (65.0% similar) in 100 aa overlap (11-108:5-99)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 :   ..:: : . :  . : :     ..   . ::. :..:.::..:. :
CCDS34       MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVS
                     10        20             30        40         

               70        80        90       100                    
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQ--TPKL         
       :. .. : : . .::: ::  ...:.:: :.::: .::.:: : .  .:.          
CCDS34 YQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPV
      50        60        70        80        90       100         

CCDS34 QRYPGNQTTC
     110         

>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17               (91 aa)
 initn: 231 init1: 127 opt: 225  Z-score: 309.9  bits: 62.2 E(32554): 6.1e-11
Smith-Waterman score: 225; 35.2% identity (71.4% similar) in 91 aa overlap (11-101:1-89)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 ::.::: : ..: :.:.   . :.: . .: : ::. .: . .:. ... 
CCDS11           MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKE
                         10        20        30         40         

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       :  : :..:   ::.: :. ....::.: .:::..... :.        
CCDS11 YFYT-SGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS      
      50         60        70        80        90       

>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17               (92 aa)
 initn: 221 init1: 140 opt: 225  Z-score: 309.8  bits: 62.2 E(32554): 6.2e-11
Smith-Waterman score: 225; 35.2% identity (74.7% similar) in 91 aa overlap (11-101:1-89)

               10        20        30        40        50        60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
                 :..:.: : .:: . :.  : ..  .. .: :.::. . ...::.. . .
CCDS11           MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIAD
                         10        20         30        40         

               70        80        90       100         
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
       : .: ::.: . .::: :: ....::::...::: ... :.        
CCDS11 YFET-SSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA     
      50         60        70        80        90       




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:26:52 2016 done: Sat Nov  5 20:26:52 2016
 Total Scan time:  1.630 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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