FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5823, 148 aa
  1>>>pF1KB5823 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4173+/-0.000699; mu= 10.3469+/- 0.042
 mean_var=56.4825+/-11.293, 0's: 0 Z-trim(108.6): 7  B-trim: 0 in 0/52
 Lambda= 0.170654
 statistics sampled from 10284 (10289) to 10284 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.316), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS8628.1 MAGOHB gene_id:55110|Hs108|chr12        ( 148)  990 251.4 1.5e-67
CCDS577.1 MAGOH gene_id:4116|Hs108|chr1            ( 146)  968 246.0 6.1e-66
CCDS76532.1 MAGOHB gene_id:55110|Hs108|chr12       ( 102)  671 172.9 4.5e-44


>>CCDS8628.1 MAGOHB gene_id:55110|Hs108|chr12             (148 aa)
 initn: 990 init1: 990 opt: 990  Z-score: 1326.5  bits: 251.4 E(32554): 1.5e-67
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB5 MAVASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MAVASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
               70        80        90       100       110       120

              130       140        
pF1KB5 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::::
CCDS86 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
              130       140        

>>CCDS577.1 MAGOH gene_id:4116|Hs108|chr1                 (146 aa)
 initn: 968 init1: 968 opt: 968  Z-score: 1297.3  bits: 246.0 E(32554): 6.1e-66
Smith-Waterman score: 968; 100.0% identity (100.0% similar) in 144 aa overlap (5-148:3-146)

               10        20        30        40        50        60
pF1KB5 MAVASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57   MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB5 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       60        70        80        90       100       110        

              130       140        
pF1KB5 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::::
CCDS57 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
      120       130       140      

>>CCDS76532.1 MAGOHB gene_id:55110|Hs108|chr12            (102 aa)
 initn: 671 init1: 671 opt: 671  Z-score: 904.7  bits: 172.9 E(32554): 4.5e-44
Smith-Waterman score: 671; 100.0% identity (100.0% similar) in 102 aa overlap (47-148:1-102)

         20        30        40        50        60        70      
pF1KB5 GKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDD
                                     ::::::::::::::::::::::::::::::
CCDS76                               MIRKEAYVHKSVMEELKRIIDDSEITKEDD
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 ALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVF
               40        50        60        70        80        90

        140        
pF1KB5 SLIGLHFKIKPI
       ::::::::::::
CCDS76 SLIGLHFKIKPI
              100  




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:36:39 2016 done: Sat Nov  5 01:36:39 2016
 Total Scan time:  1.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]