Result of FASTA (omim) for pFN21AB6698
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6698, 445 aa
  1>>>pF1KB6698 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3677+/-0.000381; mu= 17.6619+/- 0.024
 mean_var=70.2920+/-13.659, 0's: 0 Z-trim(112.4): 68  B-trim: 147 in 1/52
 Lambda= 0.152975
 statistics sampled from 21301 (21369) to 21301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.251), width:  16
 Scan time:  7.410

The best scores are:                                      opt bits E(85289)
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2994 670.1 3.3e-192
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2983 667.6 1.8e-191
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2910 651.5 1.3e-186
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2866 641.8  1e-183
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2866 641.8  1e-183
NP_001276058 (OMIM: 602662) tubulin beta-4A chain  ( 444) 2866 641.8  1e-183
NP_001276056 (OMIM: 602662) tubulin beta-4A chain  ( 489) 2866 641.8 1.1e-183
NP_001276052 (OMIM: 602662) tubulin beta-4A chain  ( 495) 2866 641.8 1.1e-183
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2793 625.7 7.5e-179
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2745 615.1 1.1e-175
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2745 615.1 1.1e-175
NP_001280141 (OMIM: 156610,191130,615771) tubulin  ( 464) 2741 614.2 2.2e-175
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2711 607.6 2.1e-173
NP_001280143 (OMIM: 156610,191130,615771) tubulin  ( 400) 2496 560.1 3.7e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2416 542.5 8.4e-154
NP_001276060 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2397 538.3 1.3e-152
NP_001280144 (OMIM: 156610,191130,615771) tubulin  ( 372) 2397 538.3 1.3e-152
NP_001280145 (OMIM: 156610,191130,615771) tubulin  ( 372) 2397 538.3 1.3e-152
NP_001276059 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2397 538.3 1.3e-152
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2356 529.2 6.7e-150
NP_001184110 (OMIM: 600638,602661,614039) tubulin  ( 378) 2344 526.6 4.4e-149
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2319 521.1  2e-147
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2293 515.3 1.1e-145
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2262 508.5 1.4e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2180 490.4 3.5e-138
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2171 488.4 1.5e-137
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2015 453.9 2.8e-127
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2015 453.9 2.8e-127
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1826 412.2 9.4e-115
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1826 412.2 9.4e-115
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1637 370.5 3.3e-102
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1277 291.1 3.9e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1269 289.4 1.3e-77
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1269 289.4 1.3e-77
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1267 288.9 1.8e-77
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain  ( 450) 1258 286.9 7.1e-77
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1240 283.0 1.1e-75
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1215 277.4   5e-74
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1162 265.7 1.6e-70
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1082 248.1 3.1e-65
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1006 231.3   4e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451)  996 229.1 1.8e-59
NP_001280142 (OMIM: 156610,191130,615771) tubulin  ( 242)  820 190.1 5.4e-48
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295)  767 178.5 2.1e-44
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain  ( 460)  625 147.2 8.2e-35
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104)  568 134.3 1.5e-31
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  520 124.0 5.5e-28
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  520 124.0 5.5e-28
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475)  517 123.4 1.3e-27
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  480 115.1 2.3e-25


>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain   (445 aa)
 initn: 2994 init1: 2994 opt: 2994  Z-score: 3571.8  bits: 670.1 E(85289): 3.3e-192
Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       :::::::::::::::::::::::::
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain   (445 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3558.6  bits: 667.6 E(85289): 1.8e-191
Smith-Waterman score: 2983; 99.6% identity (99.8% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       :::::::::::::::::::::::::
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s  (445 aa)
 initn: 2910 init1: 2910 opt: 2910  Z-score: 3471.6  bits: 651.5 E(85289): 1.3e-186
Smith-Waterman score: 2910; 96.4% identity (99.1% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:.:::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       :::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       ::::::::::.:.::::::  :. :
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
              430       440     

>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform  (444 aa)
 initn: 2873 init1: 2841 opt: 2866  Z-score: 3419.1  bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:1-444)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       :::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       :::::::::: :.::::::  :. :
NP_006 EYQQYQDATA-EEGEFEEEAEEEVA
              430        440    

>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch  (444 aa)
 initn: 2863 init1: 2863 opt: 2866  Z-score: 3419.1  bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.3% identity (99.1% similar) in 445 aa overlap (1-445:1-444)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::::::::::::::::::::::::::::::.:::::::::.::.::::::.:.:::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       :::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       ::::::::::.:. .: :: .:.::
NP_821 EYQQYQDATAEEEEDFGEE-AEEEA
              430        440    

>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof  (444 aa)
 initn: 2873 init1: 2841 opt: 2866  Z-score: 3419.1  bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:1-444)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       :::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
       :::::::::: :.::::::  :. :
NP_001 EYQQYQDATA-EEGEFEEEAEEEVA
              430        440    

>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof  (489 aa)
 initn: 2873 init1: 2841 opt: 2866  Z-score: 3418.5  bits: 641.8 E(85289): 1.1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:46-489)

                                             10        20        30
pF1KB6                               MREIVHIQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
          20        30        40        50        60        70     

               40        50        60        70        80        90
pF1KB6 DPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::.:::::::::::::::::::.:..:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
          80        90       100       110       120       130     

              100       110       120       130       140       150
pF1KB6 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
         140       150       160       170       180       190     

              160       170       180       190       200       210
pF1KB6 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI
       ::::::::.::::::::::.:::::::::::::::::::::::::::::: :::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
         200       210       220       230       240       250     

              220       230       240       250       260       270
pF1KB6 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
         260       270       280       290       300       310     

              280       290       300       310       320       330
pF1KB6 APLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM
       :::::::::::::::::::::::::.:::::::::::::::::::.::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
         320       330       340       350       360       370     

              340       350       360       370       380       390
pF1KB6 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFR
       :.::.::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
         380       390       400       410       420       430     

              400       410       420       430       440     
pF1KB6 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
       :::::::::::::::::::::::::::::::::::::::: :.::::::  :. :
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA-EEGEFEEEAEEEVA
         440       450       460       470        480         

>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof  (495 aa)
 initn: 2873 init1: 2841 opt: 2866  Z-score: 3418.4  bits: 641.8 E(85289): 1.1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:52-495)

                                             10        20        30
pF1KB6                               MREIVHIQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KB6 DPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::.:::::::::::::::::::.:..:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KB6 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
             150       160       170       180       190       200 

              160       170       180       190       200       210
pF1KB6 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI
       ::::::::.::::::::::.:::::::::::::::::::::::::::::: :::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
             210       220       230       240       250       260 

              220       230       240       250       260       270
pF1KB6 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
             270       280       290       300       310       320 

              280       290       300       310       320       330
pF1KB6 APLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM
       :::::::::::::::::::::::::.:::::::::::::::::::.::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
             330       340       350       360       370       380 

              340       350       360       370       380       390
pF1KB6 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFR
       :.::.::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
             390       400       410       420       430       440 

              400       410       420       430       440     
pF1KB6 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
       :::::::::::::::::::::::::::::::::::::::: :.::::::  :. :
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA-EEGEFEEEAEEEVA
             450       460       470       480        490     

>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3   (450 aa)
 initn: 2784 init1: 2784 opt: 2793  Z-score: 3331.9  bits: 625.7 E(85289): 7.5e-179
Smith-Waterman score: 2793; 91.9% identity (98.2% similar) in 446 aa overlap (1-445:1-446)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       ::::::::::::::::::::::::::::::::.:.: ::::::::::.::::::...:::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       ::: :.::::::::::::::::::::::::::::.::::::::::::::.::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::.::::::::::: ::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       ::::::::::::::::::::::::::::::::::.::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::..::::::::::::::: .:.:::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440         
pF1KB6 EYQQYQDATADEQGE-FEEEEGEDEA    
       ::::::::::.:.:: .:..: :.::    
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
              430       440       450

>>NP_115914 (OMIM: 615103) tubulin beta-6 chain isoform   (446 aa)
 initn: 2725 init1: 2725 opt: 2745  Z-score: 3274.8  bits: 615.1 E(85289): 1.1e-175
Smith-Waterman score: 2745; 91.2% identity (97.1% similar) in 443 aa overlap (1-442:1-443)

               10        20        30        40        50        60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
       :::::::::::::::::.::::::::::::::.:.: ::: ::::::::::::....:::
NP_115 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::: :::::::::::::::::::.::::::.:::.:::::::::::::::::::.:::::
NP_115 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
       ::: : ::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_115 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: :
NP_115 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::..:::
NP_115 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::..::: ::::::::::: .:.:::::::::::::::.:::::::::
NP_115 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_115 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440     
pF1KB6 EYQQYQDATADEQGE-FEEEEGEDEA
       ::::::::::..  : ::.:: :   
NP_115 EYQQYQDATANDGEEAFEDEEEEIDG
              430       440      




445 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:02:43 2016 done: Sat Nov  5 02:02:45 2016
 Total Scan time:  7.410 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com