FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3633, 822 aa
  1>>>pF1KE3633 822 - 822 aa - 822 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9736+/-0.000848; mu= 16.9350+/- 0.051
 mean_var=67.7713+/-13.619, 0's: 0 Z-trim(106.9): 22  B-trim: 379 in 2/48
 Lambda= 0.155794
 statistics sampled from 9265 (9282) to 9265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.285), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(32554)
CCDS7033.1 ANAPC2 gene_id:29882|Hs108|chr9         ( 822) 5447 1233.5       0


>>CCDS7033.1 ANAPC2 gene_id:29882|Hs108|chr9              (822 aa)
 initn: 5447 init1: 5447 opt: 5447  Z-score: 6607.1  bits: 1233.5 E(32554):    0
Smith-Waterman score: 5447; 100.0% identity (100.0% similar) in 822 aa overlap (1-822:1-822)

               10        20        30        40        50        60
pF1KE3 MAAAVVVAEGDSDSRPGQELLVAWNTVSTGLVPPAALGLVSSRTSGAVPPKEEELRAAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MAAAVVVAEGDSDSRPGQELLVAWNTVSTGLVPPAALGLVSSRTSGAVPPKEEELRAAVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VLRGHGLHSVLEEWFVEVLQNDLQANISPEFWNAISQCENSADEPQCLLLLLDAFGLLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VLRGHGLHSVLEEWFVEVLQNDLQANISPEFWNAISQCENSADEPQCLLLLLDAFGLLES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RLDPYLRSLELLEKWTRLGLLMGTGAQGLREEVHTMLRGVLFFSTPRTFQEMIQRLYGCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RLDPYLRSLELLEKWTRLGLLMGTGAQGLREEVHTMLRGVLFFSTPRTFQEMIQRLYGCF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LRVYMQSKRKGEGGTDPELEGELDSRYARRRYYRLLQSPLCAGCSSDKQQCWCRQALEQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LRVYMQSKRKGEGGTDPELEGELDSRYARRRYYRLLQSPLCAGCSSDKQQCWCRQALEQF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HQLSQVLHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 HQLSQVLHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 GKVFLQDGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRDFPDSRPAIED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GKVFLQDGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRDFPDSRPAIED
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 CEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 CEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPEDW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 VPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 NVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 NVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 WPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADRTLSVAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 WPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADRTLSVAVT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 PVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 PVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEER
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 PQDRDNMVLIDSDDESDSGMASQADQKEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 PQDRDNMVLIDSDDESDSGMASQADQKEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMF
              730       740       750       760       770       780

              790       800       810       820  
pF1KE3 VVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLPKNCS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS70 VVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLPKNCS
              790       800       810       820  




822 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:24:27 2016 done: Sat Nov  5 22:24:28 2016
 Total Scan time:  4.270 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]