FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1105, 94 aa 1>>>pF1KE1105 94 - 94 aa - 94 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9300+/-0.000559; mu= 11.2935+/- 0.033 mean_var=59.1113+/-11.434, 0's: 0 Z-trim(113.0): 7 B-trim: 0 in 0/50 Lambda= 0.166816 statistics sampled from 13692 (13698) to 13692 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.421), width: 16 Scan time: 1.520 The best scores are: opt bits E(32554) CCDS5962.1 DEFA3 gene_id:1668|Hs108|chr8 ( 94) 647 162.8 2.8e-41 CCDS34797.1 DEFA1 gene_id:1667|Hs108|chr8 ( 94) 637 160.4 1.5e-40 CCDS43691.1 DEFA1B gene_id:728358|Hs108|chr8 ( 94) 637 160.4 1.5e-40 CCDS5961.1 DEFA4 gene_id:1669|Hs108|chr8 ( 97) 276 73.5 2.2e-14 CCDS5963.1 DEFA5 gene_id:1670|Hs108|chr8 ( 94) 269 71.8 6.9e-14 CCDS5960.1 DEFA6 gene_id:1671|Hs108|chr8 ( 100) 250 67.3 1.7e-12 >>CCDS5962.1 DEFA3 gene_id:1668|Hs108|chr8 (94 aa) initn: 647 init1: 647 opt: 647 Z-score: 854.5 bits: 162.8 E(32554): 2.8e-41 Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC :::::::::::::::::::::::::::::::::: CCDS59 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 70 80 90 >>CCDS34797.1 DEFA1 gene_id:1667|Hs108|chr8 (94 aa) initn: 637 init1: 637 opt: 637 Z-score: 841.4 bits: 160.4 E(32554): 1.5e-40 Smith-Waterman score: 637; 98.9% identity (98.9% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC :::: ::::::::::::::::::::::::::::: CCDS34 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 70 80 90 >>CCDS43691.1 DEFA1B gene_id:728358|Hs108|chr8 (94 aa) initn: 637 init1: 637 opt: 637 Z-score: 841.4 bits: 160.4 E(32554): 1.5e-40 Smith-Waterman score: 637; 98.9% identity (98.9% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC :::: ::::::::::::::::::::::::::::: CCDS43 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 70 80 90 >>CCDS5961.1 DEFA4 gene_id:1669|Hs108|chr8 (97 aa) initn: 274 init1: 163 opt: 276 Z-score: 371.7 bits: 73.5 E(32554): 2.2e-14 Smith-Waterman score: 276; 46.8% identity (70.2% similar) in 94 aa overlap (1-94:1-93) 10 20 30 40 50 60 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :: .:.::::::::::..: :::::.:: : . :: . . .. .:.:::.: : . :: CCDS59 MRIIALLAAILLVALQVRAGPLQARGDE-APGQEQRGPEDQDISISFAWDKSSALQVSGS 10 20 30 40 50 70 80 90 pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC ..: : ::. : : : :.:. : ...:: CCDS59 TRGMVCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRVD 60 70 80 90 >>CCDS5963.1 DEFA5 gene_id:1670|Hs108|chr8 (94 aa) initn: 260 init1: 142 opt: 269 Z-score: 362.8 bits: 71.8 E(32554): 6.9e-14 Smith-Waterman score: 269; 48.9% identity (68.1% similar) in 94 aa overlap (1-94:1-93) 10 20 30 40 50 60 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::.:::::::::::::::: :: :::: :.. .: . : ....:.: . : . :: CCDS59 MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS 10 20 30 40 50 70 80 90 pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC . :::: : . : :.: .:::. .:: CCDS59 QARATCYCRTGRCATRESLSGVCEISGRLYRLCCR 60 70 80 90 >>CCDS5960.1 DEFA6 gene_id:1671|Hs108|chr8 (100 aa) initn: 284 init1: 130 opt: 250 Z-score: 337.7 bits: 67.3 E(32554): 1.7e-12 Smith-Waterman score: 250; 46.0% identity (65.0% similar) in 100 aa overlap (1-94:1-99) 10 20 30 40 50 pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAA------APEQIAADIPEVVVSLAWDESLA ::::.::.:.:::::::.::::::. : . : : :: .:. . .::.: : : . CCDS59 MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSS 10 20 30 40 50 60 60 70 80 90 pF1KE1 PKHPGSRKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC . :: . . :.:: .: . : :::: .: ::: CCDS59 LRALGSTRAFTCHCR-RSCYSTEYSYGTCTVMGINHRFCCL 70 80 90 100 94 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:34:49 2016 done: Sun Nov 6 22:34:49 2016 Total Scan time: 1.520 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]