Result of FASTA (ccds) for pFN21AE1105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1105, 94 aa
  1>>>pF1KE1105 94 - 94 aa - 94 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9300+/-0.000559; mu= 11.2935+/- 0.033
 mean_var=59.1113+/-11.434, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/50
 Lambda= 0.166816
 statistics sampled from 13692 (13698) to 13692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.421), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS5962.1 DEFA3 gene_id:1668|Hs108|chr8           (  94)  647 162.8 2.8e-41
CCDS34797.1 DEFA1 gene_id:1667|Hs108|chr8          (  94)  637 160.4 1.5e-40
CCDS43691.1 DEFA1B gene_id:728358|Hs108|chr8       (  94)  637 160.4 1.5e-40
CCDS5961.1 DEFA4 gene_id:1669|Hs108|chr8           (  97)  276 73.5 2.2e-14
CCDS5963.1 DEFA5 gene_id:1670|Hs108|chr8           (  94)  269 71.8 6.9e-14
CCDS5960.1 DEFA6 gene_id:1671|Hs108|chr8           ( 100)  250 67.3 1.7e-12


>>CCDS5962.1 DEFA3 gene_id:1668|Hs108|chr8                (94 aa)
 initn: 647 init1: 647 opt: 647  Z-score: 854.5  bits: 162.8 E(32554): 2.8e-41
Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
               10        20        30        40        50        60

               70        80        90    
pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC
       ::::::::::::::::::::::::::::::::::
CCDS59 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC
               70        80        90    

>>CCDS34797.1 DEFA1 gene_id:1667|Hs108|chr8               (94 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 841.4  bits: 160.4 E(32554): 1.5e-40
Smith-Waterman score: 637; 98.9% identity (98.9% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
               10        20        30        40        50        60

               70        80        90    
pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC
       :::: :::::::::::::::::::::::::::::
CCDS34 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC
               70        80        90    

>>CCDS43691.1 DEFA1B gene_id:728358|Hs108|chr8            (94 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 841.4  bits: 160.4 E(32554): 1.5e-40
Smith-Waterman score: 637; 98.9% identity (98.9% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
               10        20        30        40        50        60

               70        80        90    
pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC
       :::: :::::::::::::::::::::::::::::
CCDS43 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC
               70        80        90    

>>CCDS5961.1 DEFA4 gene_id:1669|Hs108|chr8                (97 aa)
 initn: 274 init1: 163 opt: 276  Z-score: 371.7  bits: 73.5 E(32554): 2.2e-14
Smith-Waterman score: 276; 46.8% identity (70.2% similar) in 94 aa overlap (1-94:1-93)

               10        20        30        40        50        60
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
       :: .:.::::::::::..: :::::.:: : . :: . .  .. .:.:::.: : .  ::
CCDS59 MRIIALLAAILLVALQVRAGPLQARGDE-APGQEQRGPEDQDISISFAWDKSSALQVSGS
               10        20         30        40        50         

               70        80        90        
pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC    
        ..: : ::.  :   : : :.:.  :  ...::    
CCDS59 TRGMVCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRVD
      60        70        80        90       

>>CCDS5963.1 DEFA5 gene_id:1670|Hs108|chr8                (94 aa)
 initn: 260 init1: 142 opt: 269  Z-score: 362.8  bits: 71.8 E(32554): 6.9e-14
Smith-Waterman score: 269; 48.9% identity (68.1% similar) in 94 aa overlap (1-94:1-93)

               10        20        30        40        50        60
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
       :::.:::::::::::::::: :: :::: :.. .: . :  ....:.: .   : .  ::
CCDS59 MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS
               10        20         30        40        50         

               70        80        90     
pF1KE1 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 
       .    ::::   : . :   :.:  .:::. .:: 
CCDS59 QARATCYCRTGRCATRESLSGVCEISGRLYRLCCR
      60        70        80        90    

>>CCDS5960.1 DEFA6 gene_id:1671|Hs108|chr8                (100 aa)
 initn: 284 init1: 130 opt: 250  Z-score: 337.7  bits: 67.3 E(32554): 1.7e-12
Smith-Waterman score: 250; 46.0% identity (65.0% similar) in 100 aa overlap (1-94:1-99)

               10        20        30              40        50    
pF1KE1 MRTLAILAAILLVALQAQAEPLQARADEVAA------APEQIAADIPEVVVSLAWDESLA
       ::::.::.:.:::::::.::::::. : . :      : :: .:.  . .::.: : : .
CCDS59 MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSS
               10        20        30        40        50        60

           60        70        80        90     
pF1KE1 PKHPGSRKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 
        .  :: . . :.::  .: . :  ::::  .:    ::: 
CCDS59 LRALGSTRAFTCHCR-RSCYSTEYSYGTCTVMGINHRFCCL
               70         80        90       100




94 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:34:49 2016 done: Sun Nov  6 22:34:49 2016
 Total Scan time:  1.520 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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