FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6134, 143 aa 1>>>pF1KE6134 143 - 143 aa - 143 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8043+/-0.00085; mu= 13.8013+/- 0.051 mean_var=53.7681+/-11.142, 0's: 0 Z-trim(105.8): 10 B-trim: 246 in 1/46 Lambda= 0.174909 statistics sampled from 8616 (8620) to 8616 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.265), width: 16 Scan time: 1.450 The best scores are: opt bits E(32554) CCDS6788.1 SLC31A2 gene_id:1318|Hs108|chr9 ( 143) 931 242.5 6.7e-65 CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9 ( 190) 223 63.9 5.1e-11 >>CCDS6788.1 SLC31A2 gene_id:1318|Hs108|chr9 (143 aa) initn: 931 init1: 931 opt: 931 Z-score: 1278.7 bits: 242.5 E(32554): 6.7e-65 Smith-Waterman score: 931; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143) 10 20 30 40 50 60 pF1KE6 MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 SISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTW 70 80 90 100 110 120 130 140 pF1KE6 IFLGVVLGSAVGYYLAYPLLSTA ::::::::::::::::::::::: CCDS67 IFLGVVLGSAVGYYLAYPLLSTA 130 140 >>CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9 (190 aa) initn: 210 init1: 118 opt: 223 Z-score: 311.3 bits: 63.9 E(32554): 5.1e-11 Smith-Waterman score: 228; 33.6% identity (65.0% similar) in 143 aa overlap (1-135:43-174) 10 20 pF1KE6 MAMHFIFSDTAV-LLFDFWSVHSPAGMALS : : : :. : :::. ... . :: . CCDS67 DSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGA 20 30 40 50 60 70 30 40 50 60 70 80 pF1KE6 VLVLLLLAVLYEGIKVGKAKLL--NQVLV---NLPTSISQQTIAETDGDSAGSD--SFPV ....:::..:::.:... .:: .:: . ..:. . :: ..:.. ::: CCDS67 FVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFP- 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE6 GRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLST :. :...:.:::::.::.:: :.:: .. ..:. :...::.: CCDS67 ----------HLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAV 140 150 160 170 180 pF1KE6 A CCDS67 VVDITEHCH 190 143 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:45:33 2016 done: Tue Nov 8 09:45:33 2016 Total Scan time: 1.450 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]