(Circular) (Six-base) MAPSORT of: pFN21AE3634.seq Check: 7645 from: 1 to: 5056 pFN21AE3634 5056 bp With 182 enzymes: SgfI * December 28, 2011 15:26 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2866 278 Size: 53 83 186 936 1330 2468 Fragments arranged by size: 2468 1330 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2399 1937 Size: 462 4594 Acc65I G'GTAC_C Cuts at: 2083 2377 2083 Size: 294 4762 AclI AA'CG_TT Cuts at: 1563 3183 3556 1563 Size: 1620 373 3063 Fragments arranged by size: 3063 1620 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3119 4503 4771 1632 Size: 1487 1384 268 1917 Fragments arranged by size: 1917 1487 1384 268 AfeI AGC'GCT Cuts at: 2315 2315 Size: 5056 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4859 AflIII A'CryG_T Cuts at: 1203 3955 4932 1203 Size: 2752 977 1327 Fragments arranged by size: 2752 1327 977 AgeI A'CCGG_T Cuts at: 3887 3887 Size: 5056 AhdI GACnn_n'nnGTC Cuts at: 3785 3785 Size: 5056 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5056 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5056 AlwNI CAG_nnn'CTG Cuts at: 2799 4371 2799 Size: 1572 3484 ApaLI G'TGCA_C Cuts at: 3113 4269 3113 Size: 1156 3900 ApoI r'AATT_y Cuts at: 1493 2365 2591 2743 4852 1493 Size: 872 226 152 2109 1697 Fragments arranged by size: 2109 1697 872 226 152 AseI AT'TA_AT Cuts at: 160 1032 3610 160 Size: 872 2578 1606 Fragments arranged by size: 2578 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5056 AvaI C'yCGr_G Cuts at: 1870 1943 2381 1870 Size: 73 438 4545 Fragments arranged by size: 4545 438 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2067 2100 2067 Size: 33 5023 BamHI G'GATC_C Cuts at: 2386 2753 2386 Size: 367 4689 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2083 2377 3832 618 Size: 325 217 627 296 294 1455 1842 Fragments arranged by size: 1842 1455 627 325 296 294 217 BanII G_rGCy'C Cuts at: 1391 2375 1391 Size: 984 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2124 928 Size: 971 225 3860 Fragments arranged by size: 3860 971 225 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3247 3281 1903 Size: 34 1310 34 3678 Fragments arranged by size: 3678 1310 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2948 4158 2948 Size: 1210 3846 BclI T'GATC_A Cuts at: 1548 1548 Size: 5056 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3667 136 Size: 107 122 71 631 605 1995 1525 Fragments arranged by size: 1995 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5051 5051 Size: 5056 BlpI GC'TnA_GC Cuts at: 2473 2473 Size: 5056 Bme1580I G_kGCm'C Cuts at: 1790 3117 4273 1790 Size: 1327 1156 2573 Fragments arranged by size: 2573 1327 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5056 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2138 2787 3745 Size: 416 53 83 399 24 721 649 958 Cuts at: 3745 442 Size: 1753 Fragments arranged by size: 1753 958 721 649 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5056 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2001 2327 3716 1239 Size: 762 326 1389 2579 Fragments arranged by size: 2579 1389 762 326 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3181 4046 4344 3181 Size: 865 298 3893 Fragments arranged by size: 3893 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3719 882 Size: 617 2220 2219 Fragments arranged by size: 2220 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2847 493 Size: 711 1643 2702 Fragments arranged by size: 2702 1643 711 BsaBI GATnn'nnATC Cuts at: 2219 5050 2219 Size: 2831 2225 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2863 3245 3880 275 Size: 53 83 186 936 1330 382 635 1451 Fragments arranged by size: 1451 1330 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3489 3887 4161 4308 4719 3489 Size: 398 274 147 411 3826 Fragments arranged by size: 3826 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4831 Fragments arranged by size: 4831 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2324 1186 Size: 1138 3918 BseYI C'CCAG_C Cuts at: 4259 4755 4259 Size: 496 4560 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2249 1163 Size: 573 513 3970 Fragments arranged by size: 3970 573 513 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2506 3267 4295 1540 Size: 275 186 505 761 1028 2301 Fragments arranged by size: 2301 1028 761 505 275 186 BsiHKAI G_wGCw'C Cuts at: 2211 3117 3202 4273 2211 Size: 906 85 1071 2994 Fragments arranged by size: 2994 1071 906 85 BsmI GAATG_Cn' Cuts at: 2567 2660 2567 Size: 93 4963 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2211 2375 3117 3202 4273 1391 Size: 399 421 164 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 421 399 164 85 BspEI T'CCGG_A Cuts at: 4719 4719 Size: 5056 BspHI T'CATG_A Cuts at: 2945 4675 2945 Size: 1730 3326 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2411 844 Size: 1567 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2943 1394 Size: 429 1120 3507 Fragments arranged by size: 3507 1120 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3551 3725 65 Size: 1183 2303 174 1396 Fragments arranged by size: 2303 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3700 3887 1700 Size: 110 1890 187 2869 Fragments arranged by size: 2869 1890 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5056 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5056 BssSI C'ACGA_G Cuts at: 3116 4128 3116 Size: 1012 4044 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5056 BstBI TT'CG_AA Cuts at: 3860 3860 Size: 5056 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5056 BstYI r'GATC_y Cuts at: 1972 2386 2753 3138 3155 4607 4693 4705 5051 Size: 414 367 385 17 1452 86 12 346 Cuts at: 5051 1972 Size: 1977 Fragments arranged by size: 1977 1452 414 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4504 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4317 Fragments arranged by size: 4317 683 56 BtsI GCAGTG_nn' Cuts at: 2572 3366 3386 2572 Size: 794 20 4242 Fragments arranged by size: 4242 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5056 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5021 DraI TTT'AAA Cuts at: 2360 2360 Size: 5056 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4063 809 Size: 507 2747 1802 Fragments arranged by size: 2747 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2325 2503 3392 Size: 54 1425 50 275 18 495 178 889 Cuts at: 3392 5021 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 495 275 178 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2503 1537 Size: 275 691 4090 Fragments arranged by size: 4090 691 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2045 2986 1353 Size: 692 941 3423 Fragments arranged by size: 3423 941 692 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3643 4017 4163 387 Size: 1064 138 2054 374 146 1280 Fragments arranged by size: 2054 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2001 2327 3119 3716 4503 4771 1239 Size: 393 369 326 792 597 787 268 1524 Fragments arranged by size: 1524 792 787 597 393 369 326 268 EcoNI CCTnn'n_nnAGG Cuts at: 2306 2306 Size: 5056 EcoRI G'AATT_C Cuts at: 2365 2743 2365 Size: 378 4678 FspI TGC'GCA Cuts at: 3562 3562 Size: 5056 HaeII r_GCGC'y Cuts at: 1678 2317 4203 1678 Size: 639 1886 2531 Fragments arranged by size: 2531 1886 639 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3697 3729 3771 3803 1373 Size: 32 135 32 2125 32 42 32 2626 Fragments arranged by size: 2626 2125 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2400 2646 669 Size: 988 281 462 246 3079 Fragments arranged by size: 3079 988 462 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5056 HpaI GTT'AAC Cuts at: 2646 2646 Size: 5056 KpnI G_GTAC'C Cuts at: 2087 2381 2087 Size: 294 4762 MfeI C'AATT_G Cuts at: 2655 2655 Size: 5056 MluI A'CGCG_T Cuts at: 4932 4932 Size: 5056 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4170 4354 1305 Size: 2865 184 2007 Fragments arranged by size: 2865 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2327 10 Size: 54 1425 343 495 2739 Fragments arranged by size: 2739 1425 495 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2225 3014 3373 3532 518 Size: 648 1059 789 359 159 2042 Fragments arranged by size: 2042 1059 789 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2472 3149 4297 4542 1606 Size: 866 677 1148 245 2120 Fragments arranged by size: 2120 1148 866 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4504 NdeI CA'TA_TG Cuts at: 387 387 Size: 5056 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5056 NotI GC'GGCC_GC Cuts at: 2503 2503 Size: 5056 NspI r_CATG'y Cuts at: 1132 1229 2414 3959 1132 Size: 97 1185 1545 2229 Fragments arranged by size: 2229 1545 1185 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5056 PciI A'CATG_T Cuts at: 3955 3955 Size: 5056 PflMI CCAn_nnn'nTGG Cuts at: 1108 2128 2203 1108 Size: 1020 75 3961 Fragments arranged by size: 3961 1020 75 PmeI GTTT'AAAC Cuts at: 2360 2360 Size: 5056 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3125 3157 4638 4670 3125 Size: 32 1481 32 3511 Fragments arranged by size: 3511 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5056 PsiI TTA'TAA Cuts at: 2626 2626 Size: 5056 PstI C_TGCA'G Cuts at: 830 2408 830 Size: 1578 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5056 SalI G'TCGA_C Cuts at: 1936 2398 1936 Size: 462 4594 SapI GCTCTTCn'nnn_ Cuts at: 2045 2045 Size: 5056 SbfI CC_TGCA'GG Cuts at: 2408 2408 Size: 5056 ScaI AGT'ACT Cuts at: 3304 5016 3304 Size: 1712 3344 SfcI C'TryA_G Cuts at: 826 1045 2245 2404 3539 4220 4411 826 Size: 219 1200 159 1135 681 191 1471 Fragments arranged by size: 1471 1200 1135 681 219 191 159 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5056 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5056 SmaI CCC'GGG Cuts at: 1872 2383 1872 Size: 511 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3160 4061 4323 820 Size: 197 926 1217 901 262 1553 Fragments arranged by size: 1553 1217 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2847 493 Size: 2354 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5056 SphI G_CATG'C Cuts at: 1132 2414 1132 Size: 1282 3774 SspI AAT'ATT Cuts at: 5 52 2980 5 Size: 47 2928 2081 Fragments arranged by size: 2928 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5056 StyI C'CwwG_G Cuts at: 513 1065 2079 2202 2495 513 Size: 552 1014 123 293 3074 Fragments arranged by size: 3074 1014 552 293 123 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3083 3100 3253 3438 3883 325 Size: 1255 1503 17 153 185 445 1498 Fragments arranged by size: 1503 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3302 5014 96 Size: 274 80 33 51 1443 1325 1712 138 Fragments arranged by size: 1712 1443 1325 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5016 5048 5016 Size: 32 5024 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5056 XbaI T'CTAG_A Cuts at: 2392 2392 Size: 5056 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5056 XmaI C'CCGG_G Cuts at: 1870 2381 1870 Size: 511 4545 XmnI GAAnn'nnTTC Cuts at: 3185 3185 Size: 5056 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2864 276 Size: 53 83 186 936 1330 2468 Fragments arranged by size: 2468 1330 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI