FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3634, 117 aa 1>>>pF1KE3634 117 - 117 aa - 117 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9151+/-0.000313; mu= 11.7905+/- 0.019 mean_var=52.9176+/-10.763, 0's: 0 Z-trim(115.1): 13 B-trim: 1294 in 1/51 Lambda= 0.176309 statistics sampled from 25325 (25338) to 25325 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.297), width: 16 Scan time: 4.560 The best scores are: opt bits E(85289) NP_006225 (OMIM: 604150) DNA-directed RNA polymera ( 117) 757 199.9 7.7e-52 XP_016867842 (OMIM: 604150) PREDICTED: DNA-directe ( 116) 739 195.3 1.8e-50 XP_005250509 (OMIM: 604150) PREDICTED: DNA-directe ( 159) 695 184.2 5.6e-47 NP_116581 (OMIM: 609881) DNA-directed RNA polymera ( 115) 666 176.8 7e-45 NP_057056 (OMIM: 613715,613717) DNA-directed RNA p ( 133) 214 61.8 3.2e-10 XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA- ( 133) 214 61.8 3.2e-10 >>NP_006225 (OMIM: 604150) DNA-directed RNA polymerase I (117 aa) initn: 757 init1: 757 opt: 757 Z-score: 1051.7 bits: 199.9 E(85289): 7.7e-52 Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 70 80 90 100 110 >>XP_016867842 (OMIM: 604150) PREDICTED: DNA-directed RN (116 aa) initn: 643 init1: 643 opt: 739 Z-score: 1027.0 bits: 195.3 E(85289): 1.8e-50 Smith-Waterman score: 739; 99.1% identity (99.1% similar) in 117 aa overlap (1-117:1-116) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: XP_016 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 60 70 80 90 100 110 >>XP_005250509 (OMIM: 604150) PREDICTED: DNA-directed RN (159 aa) initn: 695 init1: 695 opt: 695 Z-score: 964.4 bits: 184.2 E(85289): 5.6e-47 Smith-Waterman score: 695; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVGWT 70 80 90 100 110 120 XP_005 LARVPRPGTALACFFGGPGGEAAVMEEQGLPPQAPGHVD 130 140 150 >>NP_116581 (OMIM: 609881) DNA-directed RNA polymerase I (115 aa) initn: 681 init1: 569 opt: 666 Z-score: 926.7 bits: 176.8 E(85289): 7e-45 Smith-Waterman score: 666; 95.4% identity (98.2% similar) in 109 aa overlap (1-109:1-108) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG ::::::::::::::::: ::::::::::.::::::::::::::::::::::::::::::: NP_116 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::. . NP_116 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP 60 70 80 90 100 110 >>NP_057056 (OMIM: 613715,613717) DNA-directed RNA polym (133 aa) initn: 206 init1: 190 opt: 214 Z-score: 304.4 bits: 61.8 E(85289): 3.2e-10 Smith-Waterman score: 214; 32.7% identity (68.3% similar) in 104 aa overlap (14-114:20-123) 10 20 30 40 50 pF1KE3 MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL :::.: ... . . . :. :....::::::: .. ... NP_057 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD :.:.: : :: . :: : :: .:.:: : : ....:.. . . ..:...::: NP_057 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD 70 80 90 100 110 120 pF1KE3 KQEGIE .. NP_057 YKDQKASRNESTF 130 >>XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA-dire (133 aa) initn: 206 init1: 190 opt: 214 Z-score: 304.4 bits: 61.8 E(85289): 3.2e-10 Smith-Waterman score: 214; 32.7% identity (68.3% similar) in 104 aa overlap (14-114:20-123) 10 20 30 40 50 pF1KE3 MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL :::.: ... . . . :. :....::::::: .. ... XP_005 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD :.:.: : :: . :: : :: .:.:: : : ....:.. . . ..:...::: XP_005 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD 70 80 90 100 110 120 pF1KE3 KQEGIE .. XP_005 YKDQKASRNESTF 130 117 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:40:23 2016 done: Sun Nov 6 22:40:24 2016 Total Scan time: 4.560 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]