FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3634, 117 aa 1>>>pF1KE3634 117 - 117 aa - 117 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1731+/-0.000681; mu= 10.2106+/- 0.041 mean_var=52.4030+/-10.509, 0's: 0 Z-trim(107.8): 17 B-trim: 0 in 0/52 Lambda= 0.177172 statistics sampled from 9820 (9829) to 9820 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.302), width: 16 Scan time: 1.450 The best scores are: opt bits E(32554) CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7 ( 117) 757 200.9 1.5e-52 CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7 ( 115) 673 179.4 4.3e-46 CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7 ( 115) 666 177.6 1.5e-45 >>CCDS5724.1 POLR2J gene_id:5439|Hs108|chr7 (117 aa) initn: 757 init1: 757 opt: 757 Z-score: 1056.9 bits: 200.9 E(32554): 1.5e-52 Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 70 80 90 100 110 >>CCDS47673.1 POLR2J3 gene_id:548644|Hs108|chr7 (115 aa) initn: 688 init1: 576 opt: 673 Z-score: 941.0 bits: 179.4 E(32554): 4.3e-46 Smith-Waterman score: 673; 96.3% identity (98.2% similar) in 109 aa overlap (1-109:1-108) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS47 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::. . CCDS47 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP 60 70 80 90 100 110 >>CCDS43627.1 POLR2J2 gene_id:246721|Hs108|chr7 (115 aa) initn: 681 init1: 569 opt: 666 Z-score: 931.3 bits: 177.6 E(32554): 1.5e-45 Smith-Waterman score: 666; 95.4% identity (98.2% similar) in 109 aa overlap (1-109:1-108) 10 20 30 40 50 60 pF1KE3 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG ::::::::::::::::: ::::::::::.::::::::::::::::::::::::::::::: CCDS43 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 10 20 30 40 50 70 80 90 100 110 pF1KE3 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE ::::::::::::::::::::::::::::::::::::::::::::::. . CCDS43 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP 60 70 80 90 100 110 117 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:40:22 2016 done: Sun Nov 6 22:40:23 2016 Total Scan time: 1.450 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]