Result of FASTA (ccds) for pFN21AE1317
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1317, 738 aa
  1>>>pF1KE1317 738 - 738 aa - 738 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7322+/-0.00142; mu= 13.3458+/- 0.086
 mean_var=115.0637+/-23.225, 0's: 0 Z-trim(101.3): 89  B-trim: 5 in 2/49
 Lambda= 0.119565
 statistics sampled from 6373 (6452) to 6373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.538), E-opt: 0.2 (0.198), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS74132.1 PECAM1 gene_id:5175|Hs108|chr17        ( 738) 4772 835.4       0


>>CCDS74132.1 PECAM1 gene_id:5175|Hs108|chr17             (738 aa)
 initn: 4772 init1: 4772 opt: 4772  Z-score: 4457.4  bits: 835.4 E(32554):    0
Smith-Waterman score: 4772; 99.7% identity (99.9% similar) in 738 aa overlap (1-738:1-738)

               10        20        30        40        50        60
pF1KE1 MQPRWAQGATMWLGVLLTLLLCSSLEGQENSFTINSVDMKSLPDWTVQNGKNLTLQCFAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQPRWAQGATMWLGVLLTLLLCSSLEGQENSFTINSVDMKSLPDWTVQNGKNLTLQCFAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VSTTSHVKPQHQMLFYKDDVLFYNISSMKSTESYFIPEVRIYDSGTYKCTVIVNNKEKTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VSTTSHVKPQHQMLFYKDDVLFYNISSMKSTESYFIPEVRIYDSGTYKCTVIVNNKEKTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AEYQVLVEGVPSPRVTLDKKEAIQGGIVRVNCSVPEEKAPIHFTIEKLELNEKMVKLKRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AEYQVLVEGVPSPRVTLDKKEAIQGGIVRVNCSVPEEKAPIHFTIEKLELNEKMVKLKRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KNSRDQNFVILEFPVEEQDRVLSFRCQARIISGIHMQTSESTKSELVTVTESFSTPKFHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KNSRDQNFVILEFPVEEQDRVLSFRCQARIISGIHMQTSESTKSELVTVTESFSTPKFHI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SPTGMIMEGAQLHIKCTIQVTHLAQEFPEIIIQKDKAIVAHNRHGNKAVYSVMAMVEHSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SPTGMIMEGAQLHIKCTIQVTHLAQEFPEIIIQKDKAIVAHNRHGNKAVYSVMAMVEHSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 NYTCKVESSRISKVSSIVVNITELFSKPELESSFTHLDQGERLNLSCSIPGAPPANFTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NYTCKVESSRISKVSSIVVNITELFSKPELESSFTHLDQGERLNLSCSIPGAPPANFTIQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 KEDTIVSQTQDFTKIASKSDSGTYICTAGIDKVVKKSNTVQIVVCEMLSQPRISYDAQFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KEDTIVSQTQDFTKIASKSDSGTYICTAGIDKVVKKSNTVQIVVCEMLSQPRISYDAQFE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 VIKGQTIEVRCESISGTLPISYQLLKTSKVLENSTKNSNDPAVFKDNPTEDVEYQCVADN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VIKGQTIEVRCESISGTLPISYQLLKTSKVLENSTKNSNDPAVFKDNPTEDVEYQCVADN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 CHSHAKMLSEVLRVKVIAPVDEVQISILSSKVVESGEDIVLQCAVNEGSGPITYKFYREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CHSHAKMLSEVLRVKVIAPVDEVQISILSSKVVESGEDIVLQCAVNEGSGPITYKFYREK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 EGKPFYQMTSNATQAFWTKQKANKEQEGEYYCTAFNRANHASSVPRSKILTVRVILAPWK
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS74 EGKPFYQMTSNATQAFWTKQKASKEQEGEYYCTAFNRANHASSVPRSKILTVRVILAPWK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 KGLIAVVIIGVIIALLIIAAKCYFLRKAKAKQMPVEMSRPAVPLLNSNNEKMSDPNMEAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KGLIAVVIIGVIIALLIIAAKCYFLRKAKAKQMPVEMSRPAVPLLNSNNEKMSDPNMEAN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 SHYGHNDDVGNHAMKPINDNKEPLNSDVQYTEVQVSSAESHKDLGKKDTETVYSEVRKAV
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SHYGHNDDVRNHAMKPINDNKEPLNSDVQYTEVQVSSAESHKDLGKKDTETVYSEVRKAV
              670       680       690       700       710       720

              730        
pF1KE1 PDAVESRYSRTEGSLDGT
       ::::::::::::::::::
CCDS74 PDAVESRYSRTEGSLDGT
              730        




738 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:41:56 2016 done: Sun Nov  6 22:41:56 2016
 Total Scan time:  3.560 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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