FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3909, 296 aa 1>>>pF1KE3909 296 - 296 aa - 296 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4907+/-0.000393; mu= 15.5455+/- 0.025 mean_var=84.3968+/-17.104, 0's: 0 Z-trim(113.2): 375 B-trim: 510 in 1/53 Lambda= 0.139608 statistics sampled from 22038 (22474) to 22038 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.264), width: 16 Scan time: 4.450 The best scores are: opt bits E(85289) NP_859053 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1978 408.1 1e-113 NP_005252 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1978 408.1 1e-113 XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding ( 208) 1371 285.8 5e-77 NP_004156 (OMIM: 179503) GTP-binding protein RAD [ ( 308) 1073 225.9 7.8e-59 NP_001122322 (OMIM: 179503) GTP-binding protein RA ( 308) 1073 225.9 7.8e-59 XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 884 187.8 2.2e-47 XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 884 187.8 2.2e-47 NP_054731 (OMIM: 610388) GTP-binding protein REM 1 ( 298) 881 187.2 3.3e-47 XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding ( 304) 879 186.8 4.5e-47 XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding ( 341) 778 166.5 6.5e-41 XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding ( 373) 778 166.5 7e-41 NP_775798 (OMIM: 616955) GTP-binding protein REM 2 ( 340) 768 164.5 2.6e-40 XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding ( 372) 768 164.5 2.8e-40 XP_011534820 (OMIM: 616955) PREDICTED: GTP-binding ( 279) 491 108.6 1.4e-23 NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 417 93.7 3.8e-19 NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 413 92.8 6.3e-19 NP_002921 (OMIM: 609592) GTP-binding protein Rit2 ( 217) 408 91.8 1.3e-18 XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206) 387 87.6 2.3e-17 XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206) 387 87.6 2.3e-17 NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206) 387 87.6 2.3e-17 XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 373 84.8 1.7e-16 XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16 XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16 NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 371 84.4 2.1e-16 XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16 XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 371 84.4 2.1e-16 XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 371 84.4 2.3e-16 XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 371 84.4 2.3e-16 NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183) 355 81.1 1.8e-15 XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 355 81.1 1.8e-15 NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 355 81.1 1.8e-15 NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 354 80.9 2.1e-15 XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 354 80.9 2.1e-15 XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 354 81.0 2.4e-15 NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 350 80.1 3.9e-15 NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 339 77.9 1.7e-14 NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 339 77.9 1.7e-14 NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 339 77.9 1.7e-14 NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 338 77.7 2e-14 NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 332 76.5 4.4e-14 NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199) 331 76.3 5.5e-14 NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 331 76.3 5.9e-14 XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 324 74.9 1.5e-13 NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 324 74.9 1.5e-13 XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 324 74.9 1.5e-13 NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 324 74.9 1.5e-13 NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 324 74.9 1.5e-13 XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184) 321 74.2 2.1e-13 XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184) 321 74.2 2.1e-13 NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184) 321 74.2 2.1e-13 >>NP_859053 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa) initn: 1978 init1: 1978 opt: 1978 Z-score: 2162.6 bits: 408.1 E(85289): 1e-113 Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296) 10 20 30 40 50 60 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL 250 260 270 280 290 >>NP_005252 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa) initn: 1978 init1: 1978 opt: 1978 Z-score: 2162.6 bits: 408.1 E(85289): 1e-113 Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296) 10 20 30 40 50 60 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFKLKSKSCHDLSVL 250 260 270 280 290 >>XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding pro (208 aa) initn: 1371 init1: 1371 opt: 1371 Z-score: 1503.9 bits: 285.8 E(85289): 5e-77 Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPEDHCRRSWSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR :::::::::::::::::::::::: XP_016 TEDIPIILVGNKSDLVRCREVSVSGTLQ 190 200 >>NP_004156 (OMIM: 179503) GTP-binding protein RAD [Homo (308 aa) initn: 1007 init1: 814 opt: 1073 Z-score: 1177.2 bits: 225.9 E(85289): 7.8e-59 Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (9-296:23-308) 10 20 30 40 pF1KE3 MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN :.:.. : : .: :.:.: : :.. : . NP_004 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM ..: : .: :: ::. : :.: .. :.:.:.: :::::.:: ::.::.:. NP_004 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR .. :. :. ::.:...:::: :.... :.::. : ..:: ::: .::::.::::.::. NP_004 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA .:::::::::.::::::::.:.::::::::::::: :::::.:::::::::::::::::: NP_004 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE3 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA :..:::. ::::.:::.:::::::: : :: : .:.::. .::.:: :.:::.:...:: NP_004 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA 240 250 260 270 280 290 290 pF1KE3 FKLKSKSCHDLSVL :. ::::::::::: NP_004 FRAKSKSCHDLSVL 300 >>NP_001122322 (OMIM: 179503) GTP-binding protein RAD [H (308 aa) initn: 1007 init1: 814 opt: 1073 Z-score: 1177.2 bits: 225.9 E(85289): 7.8e-59 Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (9-296:23-308) 10 20 30 40 pF1KE3 MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN :.:.. : : .: :.:.: : :.. : . NP_001 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM ..: : .: :: ::. : :.: .. :.:.:.: :::::.:: ::.::.:. NP_001 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR .. :. :. ::.:...:::: :.... :.::. : ..:: ::: .::::.::::.::. NP_001 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA .:::::::::.::::::::.:.::::::::::::: :::::.:::::::::::::::::: NP_001 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE3 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA :..:::. ::::.:::.:::::::: : :: : .:.::. .::.:: :.:::.:...:: NP_001 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA 240 250 260 270 280 290 290 pF1KE3 FKLKSKSCHDLSVL :. ::::::::::: NP_001 FRAKSKSCHDLSVL 300 >>XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding pro (306 aa) initn: 733 init1: 540 opt: 884 Z-score: 971.5 bits: 187.8 E(85289): 2.2e-47 Smith-Waterman score: 884; 49.5% identity (75.9% similar) in 291 aa overlap (14-296:27-306) 10 20 30 40 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH : :: . ..:. ...: . . .. XP_005 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS : .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:.. XP_005 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ 60 70 80 90 100 110 110 120 130 140 150 pF1KE3 M-DSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSI . : ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.::::: XP_005 LGDPALPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE3 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE .::.:::.::::::::::..:.. .::::::::.::.::::::: ::::::::::::::: XP_005 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIE 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE3 TSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNK :::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. . XP_005 TSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSAR 240 250 260 270 280 280 290 pF1KE3 NMAFKLKSKSCHDLSVL :.: .:::::.:.:: XP_005 RRALKARSKSCHNLAVL 290 300 >>XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding pro (306 aa) initn: 733 init1: 540 opt: 884 Z-score: 971.5 bits: 187.8 E(85289): 2.2e-47 Smith-Waterman score: 884; 49.5% identity (75.9% similar) in 291 aa overlap (14-296:27-306) 10 20 30 40 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH : :: . ..:. ...: . . .. XP_016 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS : .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:.. XP_016 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ 60 70 80 90 100 110 110 120 130 140 150 pF1KE3 M-DSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSI . : ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.::::: XP_016 LGDPALPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE3 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE .::.:::.::::::::::..:.. .::::::::.::.::::::: ::::::::::::::: XP_016 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIE 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE3 TSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNK :::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. . XP_016 TSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSAR 240 250 260 270 280 280 290 pF1KE3 NMAFKLKSKSCHDLSVL :.: .:::::.:.:: XP_016 RRALKARSKSCHNLAVL 290 300 >>NP_054731 (OMIM: 610388) GTP-binding protein REM 1 [Ho (298 aa) initn: 748 init1: 540 opt: 881 Z-score: 968.4 bits: 187.2 E(85289): 3.3e-47 Smith-Waterman score: 894; 51.0% identity (76.9% similar) in 286 aa overlap (14-296:27-298) 10 20 30 40 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH : :: . ..:. ...: . . .. NP_054 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC : .:.: :::.:.:: : :. :::::.:. ::::..::..::: ... : NP_054 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAG---KQERDL 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 -EVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSITDRAS : ::::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::.::.: NP_054 HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE3 FEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV ::.::::::::::..:.. .::::::::.::.::::::: ::::::::::::::::::.. NP_054 FESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 QHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMAFK :::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. . :.: NP_054 QHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSARRRALK 230 240 250 260 270 280 290 pF1KE3 LKSKSCHDLSVL .:::::.:.:: NP_054 ARSKSCHNLAVL 290 >>XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding pro (304 aa) initn: 733 init1: 540 opt: 879 Z-score: 966.1 bits: 186.8 E(85289): 4.5e-47 Smith-Waterman score: 879; 49.3% identity (76.2% similar) in 290 aa overlap (14-296:27-304) 10 20 30 40 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPA-DGRHLMVQKEPHQYSHRNRH : :: . ..:. ...: . . .. XP_011 MTLNTEQEAKTPLHRRASTPLPLSPRGHQPGRLS-TVPSTQSQHPRLGQSASLNPPTQKP 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 SATPEDHCRRSWSSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG-----VHDS : .:.: :::.:.:: : :. :::::.:. ::::..::..::: .:.. XP_011 SPAPDD-----WSSESSDSEGSWEA---LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 MDSDCEVLGEDTYERTLMVDGESATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSIT . . ..::.::::: ::::..:....: :: .: .. : .. :.: :.::.:::::. XP_011 LGA-LPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIET ::.:::.::::::::::..:.. .::::::::.::.::::::: :::::::::::::::: XP_011 DRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIET 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE3 SAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKN ::..:::: :::::.:::.:::: ... .. .: :. ..:::: ....:.. . XP_011 SATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLARLTARSARR 240 250 260 270 280 290 pF1KE3 MAFKLKSKSCHDLSVL :.: .:::::.:.:: XP_011 RALKARSKSCHNLAVL 290 300 >>XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding pro (341 aa) initn: 751 init1: 636 opt: 778 Z-score: 855.5 bits: 166.5 E(85289): 6.5e-41 Smith-Waterman score: 778; 45.5% identity (71.7% similar) in 286 aa overlap (23-296:58-341) 10 20 30 40 50 pF1KE3 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED : :. :. . :.... : ... : XP_005 PPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKHQLRRAQAVDELD 30 40 50 60 70 80 60 70 80 90 100 pF1KE3 HCRRSWSSDSTDSVISSESG----NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV .. :: :.::. :.:.. . ..:.:.::.::::::::. :.:.. . . : XP_005 WPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN 90 100 110 120 130 140 110 120 130 140 150 160 pF1KE3 LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA .:::::: .::: : .:... :.::. . ::.:::.:.:::.:::.:.::: :: :. XP_005 PAEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV 150 160 170 180 190 200 170 180 190 200 210 220 pF1KE3 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV : ..:: .: .:.:.:::::::::.: ::::. ::: : ...:: ::::::..::. XP_005 PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 210 220 230 240 250 260 230 240 250 260 270 280 pF1KE3 KELFEGIVRQVRLRRDSKEKNERRL--------AYQKRKESMPRKARRFWGKIVAKNNKN .::::: :::.:::: .. . .: : :.::. .::.:: ...: .: : XP_005 RELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRESLTKKAKRFLANLVPRNAK- 270 280 290 300 310 320 290 pF1KE3 MAFKLKSKSCHDLSVL :: .:.:::::::: XP_005 -FFKQRSRSCHDLSVL 330 340 296 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:03:04 2016 done: Sun Nov 6 09:03:05 2016 Total Scan time: 4.450 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]