FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0949, 180 aa
  1>>>pF1KB0949 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0830+/-0.00064; mu= 16.5983+/- 0.039
 mean_var=115.2991+/-21.985, 0's: 0 Z-trim(115.5): 9  B-trim: 0 in 0/54
 Lambda= 0.119443
 statistics sampled from 16108 (16113) to 16108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.495), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS13715.1 PTTG1IP gene_id:754|Hs108|chr21        ( 180) 1269 228.1 2.3e-60
CCDS68221.1 PTTG1IP gene_id:754|Hs108|chr21        ( 142)  398 77.9   3e-15


>>CCDS13715.1 PTTG1IP gene_id:754|Hs108|chr21             (180 aa)
 initn: 1269 init1: 1269 opt: 1269  Z-score: 1197.3  bits: 228.1 E(32554): 2.3e-60
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB0 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSCLWC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSCLWC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 NTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAICCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAICCCCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CRRKRSRKPDRSEEKAMREREERRIRQEERRAEMKTRHDEIRKKYGLFKEENPYARFENN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CRRKRSRKPDRSEEKAMREREERRIRQEERRAEMKTRHDEIRKKYGLFKEENPYARFENN
              130       140       150       160       170       180

>>CCDS68221.1 PTTG1IP gene_id:754|Hs108|chr21             (142 aa)
 initn: 385 init1: 385 opt: 398  Z-score: 387.2  bits: 77.9 E(32554): 3e-15
Smith-Waterman score: 398; 74.7% identity (82.8% similar) in 87 aa overlap (1-83:1-85)

               10        20        30        40        50          
pF1KB0 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVS-CLW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: 
CCDS68 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSACLK
               10        20        30        40        50        60

      60        70           80        90       100       110      
pF1KB0 CNTNKACLDYPVTSVLP---PASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAIC
        .:    ::  .:..:    : . :..                                 
CCDS68 KKTRM--LDLKTTKALQHISPDASCEVHAPQPSPAGRPRGHCGLLTLASEPASLPGQAAG
                 70        80        90       100       110        




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:25:05 2016 done: Sat Nov  5 17:25:05 2016
 Total Scan time:  1.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]