Result of FASTA (omim) for pFN21AE9655
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9655, 128 aa
  1>>>pF1KE9655 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1060+/-0.000345; mu= 11.3720+/- 0.021
 mean_var=57.8626+/-11.123, 0's: 0 Z-trim(114.6): 42  B-trim: 39 in 1/50
 Lambda= 0.168607
 statistics sampled from 24453 (24495) to 24453 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.287), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(85289)
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128)  802 202.9 1.1e-52
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129)  455 118.5   3e-27
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo  ( 130)  455 118.5   3e-27
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130)  455 118.5   3e-27
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130)  455 118.5   3e-27
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130)  452 117.8 4.9e-27
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130)  452 117.8 4.9e-27
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128)  451 117.5 5.8e-27
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128)  451 117.5 5.8e-27
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo  ( 130)  451 117.5 5.8e-27
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo  ( 130)  451 117.5 5.8e-27
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo  ( 130)  451 117.5 5.8e-27
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo  ( 130)  451 117.5 5.8e-27
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130)  451 117.5 5.8e-27
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo  ( 130)  451 117.5 5.8e-27
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131)  446 116.3 1.4e-26
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130)  445 116.1 1.6e-26
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143)  443 115.6 2.4e-26
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195)  392 103.3 1.7e-22
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196)  392 103.3 1.7e-22
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198)  392 103.3 1.8e-22
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199)  392 103.3 1.8e-22
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222)  392 103.3 1.9e-22
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235)  392 103.3   2e-22
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251)  392 103.3 2.2e-22
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252)  392 103.3 2.2e-22
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269)  392 103.3 2.3e-22
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270)  392 103.3 2.3e-22
NP_061119 (OMIM: 616141) core histone macro-H2A.2  ( 372)  393 103.7 2.6e-22
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368)  392 103.4   3e-22
NP_613075 (OMIM: 610054) core histone macro-H2A.1  ( 369)  392 103.4   3e-22
NP_004884 (OMIM: 610054) core histone macro-H2A.1  ( 371)  392 103.4   3e-22
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371)  392 103.4   3e-22
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371)  392 103.4   3e-22
NP_613258 (OMIM: 610054) core histone macro-H2A.1  ( 372)  392 103.4   3e-22
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372)  392 103.4   3e-22
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3  ( 115)  206 57.9 4.6e-09
XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276)  146 43.8  0.0009
XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318)  146 43.8 0.00093
XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326)  146 43.8 0.00093
NP_005624 (OMIM: 135300,182530,610733) son of seve (1333)  146 43.8 0.00093
NP_008870 (OMIM: 601247,616559) son of sevenless h (1332)  134 40.9  0.0071


>>NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapiens]   (128 aa)
 initn: 802 init1: 802 opt: 802  Z-score: 1066.5  bits: 202.9 E(85289): 1.1e-52
Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
               70        80        90       100       110       120

               
pF1KE9 KKGQQKTV
       ::::::::
NP_002 KKGQQKTV
               

>>NP_003508 (OMIM: 602797) histone H2A type 2-C [Homo sa  (129 aa)
 initn: 291 init1: 253 opt: 455  Z-score: 610.3  bits: 118.5 E(85289): 3e-27
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
NP_003   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120           
pF1KE9 GKKGQQKTV   
        ::         
NP_003 PKKTESHKAKSK
       120         

>>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi  (130 aa)
 initn: 252 init1: 252 opt: 455  Z-score: 610.3  bits: 118.5 E(85289): 3e-27
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: :::.::::::::::.:: :.. . :. :::: : :: ::.::
NP_254   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. ..::: :::.:.:.  :.
NP_254 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_254 PKKTESHHKAKGK
       120       130

>>NP_066409 (OMIM: 602792) histone H2A type 1-D [Homo sa  (130 aa)
 initn: 283 init1: 252 opt: 455  Z-score: 610.3  bits: 118.5 E(85289): 3e-27
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.::
NP_066   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_066 PKKTESHHKAKGK
       120       130

>>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa  (130 aa)
 initn: 281 init1: 253 opt: 455  Z-score: 610.3  bits: 118.5 E(85289): 3e-27
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
NP_003   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_003 PKKTESHHKAKGK
       120       130

>>NP_066390 (OMIM: 602786) histone H2A type 1-B/E [Homo   (130 aa)
 initn: 252 init1: 252 opt: 452  Z-score: 606.3  bits: 117.8 E(85289): 4.9e-27
Smith-Waterman score: 452; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.::
NP_066   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. ..::: :::.:.:.  :.
NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_066 PKKTESHHKAKGK
       120       130

>>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo   (130 aa)
 initn: 252 init1: 252 opt: 452  Z-score: 606.3  bits: 117.8 E(85289): 4.9e-27
Smith-Waterman score: 452; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.::
NP_003   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. ..::: :::.:.:.  :.
NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_003 PKKTESHHKAKGK
       120       130

>>NP_542163 (OMIM: 615013) histone H2A type 1-H [Homo sa  (128 aa)
 initn: 293 init1: 252 opt: 451  Z-score: 605.1  bits: 117.5 E(85289): 5.8e-27
Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.::
NP_542   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_542 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120          
pF1KE9 GKKGQQKTV  
        ::        
NP_542 PKKTESHHKAK
       120        

>>NP_066544 (OMIM: 602791) histone cluster 1, H2aj [Homo  (128 aa)
 initn: 293 init1: 252 opt: 451  Z-score: 605.1  bits: 117.5 E(85289): 5.8e-27
Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.::
NP_066   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120          
pF1KE9 GKKGQQKTV  
        ::        
NP_066 PKKTESHHKTK
       120        

>>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 283 init1: 252 opt: 451  Z-score: 605.0  bits: 117.5 E(85289): 5.8e-27
Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120)

               10        20        30        40        50        60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
             ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.::
NP_003   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE
                 10        20        30        40         50       

               70        80        90       100        110         
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
       :::::.:::::::..: :  :: :::::::::.::::..:. :.::: :::.:.:.  :.
NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
        60        70        80        90       100       110       

     120            
pF1KE9 GKKGQQKTV    
        ::          
NP_003 PKKTESHHKAKGK
       120       130




128 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:53:47 2016 done: Mon Nov  7 18:53:49 2016
 Total Scan time:  3.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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