FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9655, 128 aa 1>>>pF1KE9655 128 - 128 aa - 128 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1060+/-0.000345; mu= 11.3720+/- 0.021 mean_var=57.8626+/-11.123, 0's: 0 Z-trim(114.6): 42 B-trim: 39 in 1/50 Lambda= 0.168607 statistics sampled from 24453 (24495) to 24453 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.287), width: 16 Scan time: 3.480 The best scores are: opt bits E(85289) NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 802 202.9 1.1e-52 NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 455 118.5 3e-27 NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 455 118.5 3e-27 NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 455 118.5 3e-27 NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 455 118.5 3e-27 NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 452 117.8 4.9e-27 NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 452 117.8 4.9e-27 NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 451 117.5 5.8e-27 NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 451 117.5 5.8e-27 NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 451 117.5 5.8e-27 NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 451 117.5 5.8e-27 NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 451 117.5 5.8e-27 NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 451 117.5 5.8e-27 NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 451 117.5 5.8e-27 NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 451 117.5 5.8e-27 NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 446 116.3 1.4e-26 NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 445 116.1 1.6e-26 NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 443 115.6 2.4e-26 XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 392 103.3 1.7e-22 XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 392 103.3 1.7e-22 XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 392 103.3 1.8e-22 XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 392 103.3 1.8e-22 XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 392 103.3 1.9e-22 XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 392 103.3 2e-22 XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 392 103.3 2.2e-22 XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 392 103.3 2.2e-22 XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 392 103.3 2.3e-22 XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 392 103.3 2.3e-22 NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 393 103.7 2.6e-22 XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 392 103.4 3e-22 NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 392 103.4 3e-22 NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 392 103.4 3e-22 XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 392 103.4 3e-22 NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 392 103.4 3e-22 NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 392 103.4 3e-22 XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 392 103.4 3e-22 NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 206 57.9 4.6e-09 XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276) 146 43.8 0.0009 XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318) 146 43.8 0.00093 XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326) 146 43.8 0.00093 NP_005624 (OMIM: 135300,182530,610733) son of seve (1333) 146 43.8 0.00093 NP_008870 (OMIM: 601247,616559) son of sevenless h (1332) 134 40.9 0.0071 >>NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapiens] (128 aa) initn: 802 init1: 802 opt: 802 Z-score: 1066.5 bits: 202.9 E(85289): 1.1e-52 Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 70 80 90 100 110 120 pF1KE9 KKGQQKTV :::::::: NP_002 KKGQQKTV >>NP_003508 (OMIM: 602797) histone H2A type 2-C [Homo sa (129 aa) initn: 291 init1: 253 opt: 455 Z-score: 610.3 bits: 118.5 E(85289): 3e-27 Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.:: NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_003 PKKTESHKAKSK 120 >>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi (130 aa) initn: 252 init1: 252 opt: 455 Z-score: 610.3 bits: 118.5 E(85289): 3e-27 Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: :::.::::::::::.:: :.. . :. :::: : :: ::.:: NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. ..::: :::.:.:. :. NP_254 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_254 PKKTESHHKAKGK 120 130 >>NP_066409 (OMIM: 602792) histone H2A type 1-D [Homo sa (130 aa) initn: 283 init1: 252 opt: 455 Z-score: 610.3 bits: 118.5 E(85289): 3e-27 Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.:: NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_066 PKKTESHHKAKGK 120 130 >>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa (130 aa) initn: 281 init1: 253 opt: 455 Z-score: 610.3 bits: 118.5 E(85289): 3e-27 Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.:: NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_003 PKKTESHHKAKGK 120 130 >>NP_066390 (OMIM: 602786) histone H2A type 1-B/E [Homo (130 aa) initn: 252 init1: 252 opt: 452 Z-score: 606.3 bits: 117.8 E(85289): 4.9e-27 Smith-Waterman score: 452; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.:: NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. ..::: :::.:.:. :. NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_066 PKKTESHHKAKGK 120 130 >>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo (130 aa) initn: 252 init1: 252 opt: 452 Z-score: 606.3 bits: 117.8 E(85289): 4.9e-27 Smith-Waterman score: 452; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.:: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. ..::: :::.:.:. :. NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_003 PKKTESHHKAKGK 120 130 >>NP_542163 (OMIM: 615013) histone H2A type 1-H [Homo sa (128 aa) initn: 293 init1: 252 opt: 451 Z-score: 605.1 bits: 117.5 E(85289): 5.8e-27 Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.:: NP_542 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_542 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_542 PKKTESHHKAK 120 >>NP_066544 (OMIM: 602791) histone cluster 1, H2aj [Homo (128 aa) initn: 293 init1: 252 opt: 451 Z-score: 605.1 bits: 117.5 E(85289): 5.8e-27 Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.:: NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_066 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_066 PKKTESHHKTK 120 >>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi (130 aa) initn: 283 init1: 252 opt: 451 Z-score: 605.0 bits: 117.5 E(85289): 5.8e-27 Smith-Waterman score: 451; 64.1% identity (85.5% similar) in 117 aa overlap (7-122:5-120) 10 20 30 40 50 60 pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE ::..:::..:: .::.::::::::::.:: :.. . .. :::: : :: ::.:: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE 10 20 30 40 50 70 80 90 100 110 pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI :::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :. NP_003 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 60 70 80 90 100 110 120 pF1KE9 GKKGQQKTV :: NP_003 PKKTESHHKAKGK 120 130 128 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:53:47 2016 done: Mon Nov 7 18:53:49 2016 Total Scan time: 3.480 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]