Result of FASTA (ccds) for pFN21AE6237
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6237, 240 aa
  1>>>pF1KE6237 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5583+/-0.000655; mu= 13.6861+/- 0.040
 mean_var=75.3050+/-15.035, 0's: 0 Z-trim(111.7): 7  B-trim: 0 in 0/52
 Lambda= 0.147796
 statistics sampled from 12581 (12584) to 12581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.387), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS3430.1 SOD3 gene_id:6649|Hs108|chr4            ( 240) 1662 363.0  1e-100
CCDS33536.1 SOD1 gene_id:6647|Hs108|chr21          ( 154)  355 84.2 5.5e-17
CCDS8146.1 CCS gene_id:9973|Hs108|chr11            ( 274)  292 70.9 9.7e-13


>>CCDS3430.1 SOD3 gene_id:6649|Hs108|chr4                 (240 aa)
 initn: 1662 init1: 1662 opt: 1662  Z-score: 1921.8  bits: 363.0 E(32554): 1e-100
Smith-Waterman score: 1662; 99.6% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KE6 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS34 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA
              190       200       210       220       230       240

>>CCDS33536.1 SOD1 gene_id:6647|Hs108|chr21               (154 aa)
 initn: 351 init1: 205 opt: 355  Z-score: 418.5  bits: 84.2 E(32554): 5.5e-17
Smith-Waterman score: 355; 42.3% identity (66.9% similar) in 142 aa overlap (78-212:15-152)

        50        60        70        80        90       100       
pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPN
                                     : :.. :.:    . . .. ...:. ::  
CCDS33                 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGL-TE--
                               10        20        30         40   

       110       120       130         140            150       160
pF1KE6 SSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNF-AVRDGSLWRYR
        . ...:::.::: . :: :.:::.:::.  :  :.    : ::.::  : .::      
CCDS33 -GLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI
               50        60        70        80        90       100

              170       180       190       200       210       220
pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWER
          . ::.: : :.::..:::   ::::.:::. :...:::: :::: :.:.        
CCDS33 EDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ      
              110       120       130       140       150          

              230       240
pF1KE6 QAREHSERKKRRRESECKAA

>>CCDS8146.1 CCS gene_id:9973|Hs108|chr11                 (274 aa)
 initn: 333 init1: 152 opt: 292  Z-score: 342.2  bits: 70.9 E(32554): 9.7e-13
Smith-Waterman score: 298; 35.8% identity (60.3% similar) in 179 aa overlap (78-235:99-267)

        50        60        70        80         90       100      
pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAP-RAKLDAFFALEGFPTEP
                                     : ::: : ::.: :  ...  ...:.  ::
CCDS81 TGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEG--TIDGL--EP
       70        80        90       100       110         120      

        110       120       130         140           150       160
pF1KE6 NSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNFAVRDGSLWRYR
       .   ...::::.:::...:.: : :.:: .. :  ::    : ::.::  ::  .  :  
CCDS81 GL--HGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGN--VRADADGRAI
            130       140       150       160       170         180

              170       180       190       200       210          
pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVG---------
         .        ...::....  :::::::::.  :  .::.:.:::: ...         
CCDS81 FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP
              190       200       210       220       230       240

                  220       230       240  
pF1KE6 --VC---GPGLWERQAREHSERKKRRRESECKAA  
         .:   :  .::...:  .   : :.::       
CCDS81 KQICSCDGLTIWEERGRPIA--GKGRKESAQPPAHL
              250       260         270    




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:20:50 2016 done: Tue Nov  8 11:20:50 2016
 Total Scan time:  2.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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