FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6237, 240 aa 1>>>pF1KE6237 240 - 240 aa - 240 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5583+/-0.000655; mu= 13.6861+/- 0.040 mean_var=75.3050+/-15.035, 0's: 0 Z-trim(111.7): 7 B-trim: 0 in 0/52 Lambda= 0.147796 statistics sampled from 12581 (12584) to 12581 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.387), width: 16 Scan time: 2.240 The best scores are: opt bits E(32554) CCDS3430.1 SOD3 gene_id:6649|Hs108|chr4 ( 240) 1662 363.0 1e-100 CCDS33536.1 SOD1 gene_id:6647|Hs108|chr21 ( 154) 355 84.2 5.5e-17 CCDS8146.1 CCS gene_id:9973|Hs108|chr11 ( 274) 292 70.9 9.7e-13 >>CCDS3430.1 SOD3 gene_id:6649|Hs108|chr4 (240 aa) initn: 1662 init1: 1662 opt: 1662 Z-score: 1921.8 bits: 363.0 E(32554): 1e-100 Smith-Waterman score: 1662; 99.6% identity (100.0% similar) in 240 aa overlap (1-240:1-240) 10 20 30 40 50 60 pF1KE6 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS34 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 190 200 210 220 230 240 >>CCDS33536.1 SOD1 gene_id:6647|Hs108|chr21 (154 aa) initn: 351 init1: 205 opt: 355 Z-score: 418.5 bits: 84.2 E(32554): 5.5e-17 Smith-Waterman score: 355; 42.3% identity (66.9% similar) in 142 aa overlap (78-212:15-152) 50 60 70 80 90 100 pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPN : :.. :.: . . .. ...:. :: CCDS33 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGL-TE-- 10 20 30 40 110 120 130 140 150 160 pF1KE6 SSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNF-AVRDGSLWRYR . ...:::.::: . :: :.:::.:::. : :. : ::.:: : .:: CCDS33 -GLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWER . ::.: : :.::..::: ::::.:::. :...:::: :::: :.:. CCDS33 EDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 110 120 130 140 150 230 240 pF1KE6 QAREHSERKKRRRESECKAA >>CCDS8146.1 CCS gene_id:9973|Hs108|chr11 (274 aa) initn: 333 init1: 152 opt: 292 Z-score: 342.2 bits: 70.9 E(32554): 9.7e-13 Smith-Waterman score: 298; 35.8% identity (60.3% similar) in 179 aa overlap (78-235:99-267) 50 60 70 80 90 100 pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAP-RAKLDAFFALEGFPTEP : ::: : ::.: : ... ...:. :: CCDS81 TGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEG--TIDGL--EP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 NSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNFAVRDGSLWRYR . ...::::.:::...:.: : :.:: .. : :: : ::.:: :: . : CCDS81 GL--HGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGN--VRADADGRAI 130 140 150 160 170 180 170 180 190 200 210 pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVG--------- . ...::.... :::::::::. : .::.:.:::: ... CCDS81 FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP 190 200 210 220 230 240 220 230 240 pF1KE6 --VC---GPGLWERQAREHSERKKRRRESECKAA .: : .::...: . : :.:: CCDS81 KQICSCDGLTIWEERGRPIA--GKGRKESAQPPAHL 250 260 270 240 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:20:50 2016 done: Tue Nov 8 11:20:50 2016 Total Scan time: 2.240 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]