Result of FASTA (omim) for
pFN21AE6236
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6236, 239 aa
1>>>pF1KE6236 239 - 239 aa - 239 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8177+/-0.000317; mu= 12.9899+/- 0.020
mean_var=81.5223+/-16.600, 0's: 0 Z-trim(117.7): 55 B-trim: 0 in 0/53
Lambda= 0.142048
statistics sampled from 29836 (29892) to 29836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.35), width: 16
Scan time: 4.220
The best scores are: opt bits E(85289)
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 1598 336.4 2.6e-92
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 1598 336.4 2.6e-92
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 1598 336.4 2.6e-92
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 1598 336.4 2.6e-92
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 1598 336.4 2.6e-92
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 741 160.8 1.8e-39
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 741 160.8 1.8e-39
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens] ( 230) 741 160.8 1.8e-39
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] ( 209) 661 144.4 1.5e-34
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224) 651 142.4 6.4e-34
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211) 649 141.9 8.1e-34
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] ( 220) 639 139.9 3.5e-33
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211) 631 138.2 1e-32
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] ( 217) 630 138.0 1.2e-32
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211) 623 136.6 3.3e-32
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211) 623 136.6 3.3e-32
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220) 606 133.1 3.8e-31
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224) 558 123.3 3.5e-28
XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 558 123.4 4.5e-28
NP_001124333 (OMIM: 602101) claudin-5 [Homo sapien ( 303) 558 123.4 4.5e-28
XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 558 123.4 4.5e-28
NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens] ( 303) 558 123.4 4.5e-28
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] ( 225) 552 122.1 8.3e-28
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228) 462 103.6 3e-22
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228) 462 103.6 3e-22
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218) 442 99.5 4.9e-21
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145) 417 94.3 1.2e-19
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261) 334 77.4 2.6e-14
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261) 323 75.2 1.3e-13
NP_005593 (OMIM: 601326) claudin-11 isoform 1 [Hom ( 207) 293 69.0 7.3e-12
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292) 248 59.8 5.8e-09
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305) 216 53.3 5.7e-07
>>NP_036262 (OMIM: 605608,614035) claudin-14 [Homo sapie (239 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1778.4 bits: 336.4 E(85289): 2.6e-92
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
190 200 210 220 230
>>NP_001139551 (OMIM: 605608,614035) claudin-14 [Homo sa (239 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1778.4 bits: 336.4 E(85289): 2.6e-92
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
190 200 210 220 230
>>NP_001139549 (OMIM: 605608,614035) claudin-14 [Homo sa (239 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1778.4 bits: 336.4 E(85289): 2.6e-92
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
190 200 210 220 230
>>NP_001139550 (OMIM: 605608,614035) claudin-14 [Homo sa (239 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1778.4 bits: 336.4 E(85289): 2.6e-92
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
190 200 210 220 230
>>NP_652763 (OMIM: 605608,614035) claudin-14 [Homo sapie (239 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1778.4 bits: 336.4 E(85289): 2.6e-92
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_652 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_652 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_652 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_652 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
190 200 210 220 230
>>NP_001164563 (OMIM: 300520) claudin-2 [Homo sapiens] (230 aa)
initn: 766 init1: 707 opt: 741 Z-score: 829.4 bits: 160.8 E(85289): 1.8e-39
Smith-Waterman score: 741; 47.8% identity (78.3% similar) in 230 aa overlap (1-226:1-227)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::: ..::.:..:..::..:::.. .:: :. ...::..:.:::.. :::::::. ::::
NP_001 MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
: ::.:: .::.:: :.:::.:.:: : .:..:: .:.::.:: . . :: :.
NP_001 ITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::..:::.::: .. :.:. . ....::.::.:..::::::.:::::.::: .:::.: .
NP_001 GGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGII
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAP----YRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLN
::.::... : ::: : :: .. :. ::: . .. . :.:
NP_001 LCFSCSSQRNRSNYYDAYQAQPLATRSSPR--PG-QPPKVKSEFNSYSLTGYV
190 200 210 220 230
pF1KE6 DYV
>>NP_001164566 (OMIM: 300520) claudin-2 [Homo sapiens] (230 aa)
initn: 766 init1: 707 opt: 741 Z-score: 829.4 bits: 160.8 E(85289): 1.8e-39
Smith-Waterman score: 741; 47.8% identity (78.3% similar) in 230 aa overlap (1-226:1-227)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::: ..::.:..:..::..:::.. .:: :. ...::..:.:::.. :::::::. ::::
NP_001 MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
: ::.:: .::.:: :.:::.:.:: : .:..:: .:.::.:: . . :: :.
NP_001 ITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::..:::.::: .. :.:. . ....::.::.:..::::::.:::::.::: .:::.: .
NP_001 GGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGII
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAP----YRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLN
::.::... : ::: : :: .. :. ::: . .. . :.:
NP_001 LCFSCSSQRNRSNYYDAYQAQPLATRSSPR--PG-QPPKVKSEFNSYSLTGYV
190 200 210 220 230
pF1KE6 DYV
>>NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens] (230 aa)
initn: 766 init1: 707 opt: 741 Z-score: 829.4 bits: 160.8 E(85289): 1.8e-39
Smith-Waterman score: 741; 47.8% identity (78.3% similar) in 230 aa overlap (1-226:1-227)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::: ..::.:..:..::..:::.. .:: :. ...::..:.:::.. :::::::. ::::
NP_065 MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
: ::.:: .::.:: :.:::.:.:: : .:..:: .:.::.:: . . :: :.
NP_065 ITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
::..:::.::: .. :.:. . ....::.::.:..::::::.:::::.::: .:::.: .
NP_065 GGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGII
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAP----YRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLN
::.::... : ::: : :: .. :. ::: . .. . :.:
NP_065 LCFSCSSQRNRSNYYDAYQAQPLATRSSPR--PG-QPPKVKSEFNSYSLTGYV
190 200 210 220 230
pF1KE6 DYV
>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] (209 aa)
initn: 708 init1: 643 opt: 661 Z-score: 741.5 bits: 144.4 E(85289): 1.5e-34
Smith-Waterman score: 661; 45.9% identity (77.3% similar) in 207 aa overlap (1-207:1-206)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::: ..:..:. :. :: ..... :: :: :: .:.::.:. . .::::.:: .:::
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL
.::..: :::::::::::::::..:: ...... .:.: ::: : . ::. :.
NP_001 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL
.:..:.::::. .: ::::.....:.:::::. ::.: :.: .::.:. .:.: :.:: :
NP_001 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 LCLSCQDEAPYRPYQAPPRATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLNDYV
:: .: .. .::.: :. ..: .
NP_001 LCCNCPPRTD-KPYSAKYSAARSAAASNYV
190 200
>>NP_683763 (OMIM: 248190,610036) claudin-19 isoform a [ (224 aa)
initn: 669 init1: 386 opt: 651 Z-score: 729.9 bits: 142.4 E(85289): 6.4e-34
Smith-Waterman score: 651; 44.8% identity (75.1% similar) in 221 aa overlap (1-218:1-219)
10 20 30 40 50 60
pF1KE6 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG
::....::::..:.. : :: . .: ::.:......: :.:::. .:::: :. .:::
NP_683 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTG
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTP-AKTTFAI
::..: ::::: .:.::::::.. ::. .: . .:.:::::: . ..: :: ::
NP_683 QVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 LGGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGT
::.::::::: ..:::: .. :.:.:.:: : . ..:.: ::..:. :..:...::.
NP_683 AGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 LLCLSCQDEAPYRPYQAP-P-RATTTTANTAPAYQPPAAYKDNRAPSVTSATHSGYRLND
.:: .: . : :: ..: : : ..: :. . ::. :
NP_683 FLCCTCPE--PERPNSSPQPYRPGPSAAAREPVVKLPASAKGPLGV
190 200 210 220
pF1KE6 YV
239 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:20:17 2016 done: Tue Nov 8 11:20:18 2016
Total Scan time: 4.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]